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Schema
Citing CMDGA
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Assay category
5
DNA binding
1
DNA accessibility
Assay
5
ChIP-seq
1
FAIRE-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
9
hg19
GRCh38
Organism
6
Homo sapiens
Target of assay
3
transcription factor
2
control
1
RNA binding protein
Biosample type
4
cell line
1
in vitro differentiated cells
1
tissue
Organ
4
liver
1
connective tissue
1
pancreas
Life stage
4
child
2
unknown
Available data
6
bam
6
fastq
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
3
tar
Platform
4
Illumina Genome Analyzer
1
Illumina Genome Analyzer I
1
Illumina Genome Analyzer II
Run type
6
single-ended
Read length (nt)
118
101
107
50
76
100
74
36
61
8
39
51
33
90
24
76
23
98
20
16
20
28
17
40
15
26
15
49
14
27
10
91
9
75
7
24
6
35
4
25
4
94
3
32
3
200
2
67
2
97
2
150
1
33
1
38
1
69
1
99
1
105
1
110
1
147
Library made from
6
DNA
Date released
4
November, 2017
2
August, 2017
Lab
6
AMP-T2D consortium
Replication type
3
isogenic
3
unreplicated
assembly!
GRCh38
files.file_type!
bedpe
organ_slims!
lung
Showing 6 of 6 results
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Experiment
TSTSR829588
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR665514
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
MYC
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR978069
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
POLR2A
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR175970
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR471850
released
ChIP-seq
of adipocyte
Homo sapiens
adipocyte
Target:
rabbit-IgG-control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP