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Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
2
variant allelic effects
1
chromatin state
Annotation Category
2
Genetic variant effects
2
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
2
snATAC-seq
1
ChIP-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
14
hg19
GRCh38
Organism
5
Homo sapiens
Biosample type
3
tissue
2
primary cell
Biosample term
2
stomach
1
parietal cell
1
peptic cell
1
stomach smooth muscle
Organ
294
epithelium
168
kidney
pancreas
71
connective tissue
48
vasculature
30
blood vessel
25
musculature of body
20
brain
13
intestine
12
liver
10
pituitary gland
9
lung
8
large intestine
7
artery
7
skin of body
6
adipose tissue
6
blood
6
bodily fluid
6
embryo
6
lymphatic vessel
5
stomach
4
mammary gland
3
adrenal gland
3
extraembryonic component
3
heart
3
limb
3
prostate gland
2
bone element
2
bone marrow
2
bronchus
2
esophagus
2
small intestine
2
thyroid gland
2
uterus
2
vein
1
breast
1
gonad
1
lymph node
1
ovary
1
penis
1
placenta
1
spinal cord
1
spleen
1
thymus
Date released
2
February, 2024
2
May, 2021
1
August, 2017
Software used
2
abc
2
deltasvm
1
chromhmm
Lab
AMP-T2D consortium
2
Bing Ren, UCSD
2
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
5
AMP
RFA
5
AMP
assembly!
GRCh38
lab.title!
AMP-T2D consortium
organ_slims!
pancreas
Showing 5 of 5 results
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Download
FileSet
DSR408DBU
released
Annotation file set
: enhancer-gene predicton of stomach_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR821UNZ
released
Annotation file set
: enhancer-gene predicton of stomach-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR855UCF
released
Annotation file set
: Variant allelic effects annotation of Parietal cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR552HSG
released
Annotation file set
: Variant allelic effects annotation of Gastric chief cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
TSTSR469602
released
Annotation file set
: ChromHMM 13-state model for stomach smooth muscle
Lab:
Stephen Parker, UMich
Project:
AMP