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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
gene expression
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
2
ChIP-seq
1
snRNA-seq
Available data
bed bed3+
2
bed bed9
2
bigWig
tsv
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
primary cell
Biosample term
21
heart
20
brain
20
stomach
18
A549
17
islet of Langerhans
17
lung
16
kidney
16
muscle of arm
16
small intestine
15
adrenal gland
15
muscle of leg
15
placenta
14
liver
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
11
right kidney
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
9
CD4-positive, alpha-beta memory T cell
9
adipose tissue
9
heart left ventricle
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
B cell
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
induced pluripotent stem cell
7
macrophage
7
mature neutrophil
7
spleen
6
K562
6
T cell
6
embryonic stem cell
6
hepatocyte
6
lymphoblastoid cell line
6
monocyte
6
mononuclear cell
6
neutrophil
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
caudate nucleus
5
endothelial cell of umbilical vein
5
heart right ventricle
5
neural progenitor cell
5
ovary
5
regulatory T cell
5
sigmoid colon
5
skeletal muscle tissue
5
thyroid gland
5
tibial nerve
5
transverse colon
5
trophoblast cell
4
CD14-positive monocyte
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
foreskin keratinocyte
4
gastrocnemius medialis
4
layer of hippocampus
4
mesenchymal stem cell
4
muscle of trunk
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
natural killer cell
4
psoas muscle
4
putamen
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
4
skin of body
4
substantia nigra
4
temporal lobe
4
testis
4
tibial artery
3
CD4-positive, alpha-beta T cell
3
HeLa-S3
3
Peyer's patch
3
adipocyte
3
ascending aorta
3
blood cell
3
cartilage tissue
3
cerebellum
3
chorion membrane
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
frontal cortex
3
glomerular endothelial cell
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
kidney glomerular epithelial cell
3
kidney tubule cell
3
left renal cortex interstitium
3
mammary gland epithelial cell
3
naive T cell
3
neurosphere
3
pancreas
3
prostate gland
3
retina
3
right atrium auricular region
3
right cardiac atrium
3
right renal cortex interstitium
3
subcutaneous adipose tissue
3
thoracic aorta
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
EndoC_BH1
2
KARPAS-422 cell
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
adipose-derived stem cell
2
blood
2
breast epithelium
2
bronchial epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
differentiating adipose-derived stem cell
2
duodenal mucosa
2
endodermal cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
erythroblast
2
esophagus squamous epithelium
2
eye
2
fibroblast
2
fibroblast of breast
2
foreskin fibroblast
2
germinal matrix
2
globus pallidus
2
glomerular visceral epithelial cell
2
hepatic stellate cell
2
iPSC derived cell line
2
keratinocyte
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
left renal pelvis
2
limb
2
lower leg skin
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
mucosa of rectum
2
muscle
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neural cell
2
omental fat pad
2
pancreatic acinar cell
2
pancreatic ductal cell
2
parathyroid adenoma
2
pons
2
renal cortical epithelial cell
2
right renal pelvis
2
skeletal muscle fiber
2
skin fibroblast
2
smooth muscle cell
2
stomach smooth muscle
2
superior temporal gyrus
2
tongue
2
trophoblast
2
urinary bladder
2
uterus
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
Ammon's horn
1
BE(2)-C
1
BJ cell
1
BL-2 cell
Organ
3
connective tissue
Life stage
1
adult
1
unknown
Date released
2
September, 2022
1
February, 2024
Software used
2
chromhmm
1
deeptools
1
r
1
samtools
1
umitools
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
2
AMP
1
AMP2
assembly!
hg18
files.file_type!
bed bed3+
tsv
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP