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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
0
tissue
Biosample term
130
monocyte
90
heart
86
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
63
small intestine
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
50
CD8-positive, alpha-beta T cell
48
liver
48
thymus
45
islet of Langerhans
45
right lung
42
right kidney
40
B cell
40
endothelial cell
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
34
heart left ventricle
34
spleen
33
hepatocyte
32
CD4-positive, alpha-beta memory T cell
32
adipose tissue
31
CD14-positive monocyte
31
spinal cord
29
fibroblast
28
macrophage
28
regulatory T cell
24
body of pancreas
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
caudate nucleus
22
pancreas
22
pericyte cell
21
T-helper 17 cell
21
coronary artery
21
glomerular endothelial cell
21
natural killer cell
20
endothelial cell of umbilical vein
20
mononuclear cell
20
ovary
20
pancreatic ductal cell
20
pigmented layer of retina
20
psoas muscle
20
smooth muscle cell
20
subcutaneous adipose tissue
19
foreskin keratinocyte
19
heart right ventricle
19
right atrium auricular region
18
gastrocnemius medialis
18
pancreatic beta cell
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
18
trophoblast cell
17
T-helper 2 cell
17
astrocyte
17
keratinocyte
17
muscle of trunk
17
osteoblast
17
pancreatic alpha cell
17
testis
16
ascending aorta
16
cerebellum
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
foreskin fibroblast
16
frontal cortex
16
layer of hippocampus
16
omental fat pad
16
skeletal muscle tissue
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
endocrine pancreas
15
neutrophil
15
pancreatic acinar cell
15
pancreatic delta cell
15
skeletal muscle myoblast
14
Peyer's patch
14
prostate gland
14
putamen
13
aorta
13
mammary epithelial cell
13
mammary gland epithelial cell
13
neurosphere
13
skeletal muscle satellite cell
13
temporal lobe
12
Ammon's horn
12
bronchial epithelial cell
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
left cardiac atrium
12
left renal cortex interstitium
12
naive thymus-derived CD4-positive, alpha-beta T cell
11
breast epithelium
11
erythroblast
11
esophagus muscularis mucosa
11
esophagus squamous epithelium
11
glomerular visceral epithelial cell
11
left renal pelvis
11
right renal pelvis
10
angular gyrus
10
chorion membrane
10
colonic mucosa
10
dermis blood vessel endothelial cell
10
esophagus
10
kidney tubule cell
10
pancreatic stellate cell
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
cingulate gyrus
9
duodenal mucosa
9
epithelial cell of prostate
9
eye
9
hepatic stellate cell
9
lower leg skin
9
parathyroid adenoma
9
tongue
9
vagina
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
globus pallidus
8
glutamatergic neuron
8
kidney glomerular epithelial cell
8
limb
8
mature neutrophil
8
memory B cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
retinal pigment epithelial cell
8
skeletal muscle fiber
7
CD1c-positive myeloid dendritic cell
7
amygdala
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
gastroesophageal sphincter
7
hypothalamus
7
kidney epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesenchymal stem cell
7
midbrain
7
mucosa of rectum
7
renal cortical epithelial cell
7
right lobe of liver
7
skin fibroblast
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
T-cell
6
alternatively activated macrophage
6
anterior cingulate cortex
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cerebellum (Hemisphere)
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
gamma-delta T cell
6
kidney interstitial cell
6
luminal epithelial cell of mammary gland
6
medulla oblongata
6
mesangial cell
6
middle frontal gyrus
6
muscle layer of duodenum
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
occipital lobe
6
plasma cell
6
superior temporal gyrus
6
type I muscle cell
6
urinary bladder
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
Date released
2
January, 2021
Software used
1
cicero
1
macs
Lab
2
Kyle Gaulton, UCSD
Project
2
T1D
RFA
2
T1D
assembly!
hg18
organ_slims!
nerve
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR519OVI
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of nonclassical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR325RMY
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of nonclassical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D