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Embeddings type
2
Accessible chromatin
Gene expression
Embeddings Category
2
umap
Underlying Assay
1
10X snATAC-seq
1
sciATAC-seq
Available data
2
h5ad
1
mtx
1
tsv
File set status
2
released
Organism
1
Homo sapiens
Biosample type
1
tissue
Biosample term
1
lung
1
tissues
Tissue term
1
lung
1
tissues
Organ
blood
1
bodily fluid
1
lung
1
pancreas
Date released
1
November, 2021
1
September, 2021
Lab
1
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
AMP
1
ENCODE
1
LungMap
RFA
1
ENCODE3
1
LungMap2
assembly!
hg19
award.project!
AMP
embeddings_type!
Gene expression
organ_slims!
blood
Showing 2 of 2 results
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FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap