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Getting started
Schema
Clear Filters
Annotation type
2635
pQTL
1661
target gene predictions
673
gene expression
484
differential activity
343
accessible chromatin
117
eQTL
19
caQTL
17
variant allelic effects
4
sQTL
2
Fine-mapped variants
2
variant to gene
1
binding sites
1
histone modifications
1
other
1
representative DNase hypersensitivity sites
Annotation Category
2796
Genetic variant effects
1661
Target gene links
1157
Gene expression levels
346
cis-regulatory elements
1
Others
Annotation type Category
2635
quantitative proteomics
1477
DNase-seq
413
RNA-seq
305
single cell RNA-seq
147
scRNA-seq
84
snDropSeq
22
ATAC-seq
16
snATAC-seq
13
snRNA-seq
2
ChIP-seq
Available data
3455
tsv
2094
bed bed3+
112
txt
26
csv
12
bed bed3
12
bed narrowPeak
9
bigWig
File set status
5961
released
Genome assembly (visualization)
hg19
3904
GRCh38
4
hg18
Organism
5960
Homo sapiens
Biosample type
3493
tissue
2092
primary cell
249
cell line
127
in vitro differentiated cells
Biosample term
2636
whole blood
86
head of caudate nucleus
62
T-cell
60
fibroblast
58
dorsolateral prefrontal cortex
57
endothelial cell
55
stimulated activated CD4-positive, alpha-beta T cell
49
CD4-positive, alpha-beta T cell
49
macrophage
48
posterior cingulate gyrus
44
smooth muscle cell
34
pericyte
30
activated CD4-positive, alpha-beta T cell
28
natural killer cell
27
hepatocyte
27
stimulated activated CD8-positive, alpha-beta memory T cell
25
CD8-positive, alpha-beta T cell
24
glutamatergic neuron
23
T cell
23
heart
23
monocyte
23
placenta
23
stomach
22
GABAergic neuron
21
B cell
21
kidney
20
cardiac muscle cell
20
islet of Langerhans
20
neuron
19
brain
19
epithelial cell of proximal tubule
18
adipocyte
18
endothelial cell of lymphatic vessel
17
T-helper 1 cell
17
adrenal gland
17
dendritic cell
17
muscle of arm
17
naive thymus-derived CD4-positive, alpha-beta T cell
17
naive thymus-derived CD8-positive, alpha-beta T cell
16
HCT116
16
glomerular endothelial cell
16
induced pluripotent stem cell
16
lung
15
T-helper 17 cell
15
activated CD8-positive, alpha-beta memory T cell
15
activated T-cell
15
astrocyte
15
left lung
15
muscle of back
15
pancreatic ductal cell
14
A549
14
endocardial cell
14
large intestine
13
T-helper 2 cell
13
hematopoietic multipotent progenitor cell
13
muscle of leg
13
small intestine
12
common myeloid progenitor, CD34-positive
12
heart left ventricle
12
keratinocyte
11
EndoC_BH1
11
cardiomyocytes
11
heart right ventricle
11
mast cell
11
ovary
11
renal cortex interstitium
11
right lung
10
cell of skeletal muscle
10
progenitor cell
10
progenitor cell of endocrine pancreas
10
right kidney
10
thyroid follicular cell
9
B Cell
9
extended pluripotent stem (EPS) cells
9
hepatic stellate cell
9
left kidney
9
naive B cell
9
neural progenitor cell
9
pancreas
9
regulatory T cell
9
renal pelvis
8
CD14-positive monocyte
8
H1-hESC
8
adrenal gland glandular cell
8
medium spiny neuron
8
muscle precursor cell
7
H9
7
K562
7
L2/3 intratelencephalic projecting glutamatergic neuron
7
MCF-7
7
activated naive CD4-positive, alpha-beta T cell
7
cholangiocyte
7
kidney loop of Henle thick ascending limb epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesothelial cell
7
oligodendrocyte
7
suppressor macrophage
7
thymus
6
CD4-positive, CD25-positive, alpha-beta regulatory T cell
6
L6 intratelencephalic projecting glutamatergic neuron
6
acinar cell
6
body of pancreas
6
double-positive, alpha-beta thymocyte
6
effector memory CD8-positive, alpha-beta T cell
6
endothelial cell of vascular tree
6
erythroblast
6
gastrocnemius medialis
6
glomerular visceral epithelial cell
6
inflammatory macrophage
6
kidney connecting tubule epithelial cell
6
kidney interstitial cell
6
lymphoblastoid cell line
6
megakaryocyte
6
mesothelial cell of epicardium
6
pancreatic A cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
regular ventricular cardiac myocyte
6
right lobe of liver
6
spleen
6
sst GABAergic interneuron
6
testis
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
L5 intratelencephalic projecting glutamatergic neuron
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
Schwann cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
central memory CD4-positive, alpha-beta T cell
5
central memory CD8-positive, alpha-beta T cell
5
coronary artery
5
frontal cortex
5
kidney cortex collecting duct principal cell
5
left renal cortex interstitium
5
leukocyte
5
liver
5
memory B cell
5
mesangial cell
5
mesenchymal stem cell of adipose tissue
5
oligodendrocyte precursor cell
5
omental fat pad
5
pancreatic D cell
5
pancreatic stellate cell
5
psoas muscle
5
putamen
5
pvalb GABAergic interneuron
5
retina
Organ
3159
blood
2702
blood vessel
2698
vasculature
2638
vein
2636
bodily fluid
480
brain
369
kidney
352
epithelium
233
heart
133
pancreas
131
connective tissue
131
lung
111
muscle organ
104
liver
97
skin of body
75
intestine
73
adipose tissue
60
__MARKER__
56
large intestine
54
eye
44
thymus
31
adrenal gland
31
spleen
29
extraembryonic component
28
artery
26
thyroid gland
25
placenta
24
stomach
21
bone element
19
gonad
19
musculature of body
17
mammary gland
14
small intestine
13
uterus
11
ovary
11
prostate gland
10
embryo
9
ureter
8
esophagus
8
spinal cord
8
testis
7
limb
6
skeleton
5
lymphatic vessel
4
breast
4
mouth
4
urinary bladder
4
vagina
3
nerve
3
tongue
2
pituitary gland
1
embryonic structure
1
gallbladder
1
lymphoid tissue
1
pericardium
Life stage
3240
adult
429
fetal
39
unknown
16
embryonic
1
child
1
newborn
Date released
2636
February, 2025
1984
July, 2026
320
May, 2026
281
September, 2023
178
February, 2021
101
January, 2022
91
May, 2021
70
March, 2023
66
February, 2024
54
August, 2021
39
February, 2020
33
July, 2025
30
March, 2024
17
January, 2020
17
May, 2020
11
March, 2020
9
August, 2018
6
February, 2023
4
March, 2026
3
November, 2022
2
January, 2018
2
January, 2025
2
May, 2024
2
October, 2022
1
July, 2020
1
June, 2020
1
November, 2020
Software used
704
r
133
qTLtools
110
deseq2
25
seurat
21
macs
16
deltasvm
9
salmon
5
rasqual
4
cicero
3
mach2qtl
2
matrix-eQTL
1
altius-index
1
cisgenome
1
e-range
1
limix
1
sqtlseeker
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
5207
AMP-T2D consortium
376
Kyle Gaulton, UCSD
281
KPMP
33
Stephen Parker, UMich
32
Katalin Susztak, Upenn
9
Anna Gloyn, Oxford
9
Ines Cebola, Imperial College London
4
Doug Phanstiel, UNC
4
Joseph Wu, Stanford
3
Struan F.A. Grant, CHOP
2
Stephen S. Rich Lab @UVA
1
Karen Mohlke, UNC
Project
5661
AMP
281
KPMP
17
community
2
T1D
Collection Tags
2635
UK_Biobank
1458
ENCODE-rE2G
393
HDMA
320
pyxis
281
KPMP
223
DGA
198
T1D
133
CATlas
115
AMP
101
T2D
101
eQTLCatalogue
55
GTEx
55
HPAP
39
BLUEPRINT
32
T2DKP
29
ENCODE
28
CMDGA
3
T2DKP
1
ChIP-Atlas
RFA
5584
AMP
281
KPMP
77
AMP2
17
community
2
T1D
assembly!
hg19
biosample_term_name!
AG04449 cell
Showing 4 of 5961 results
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FileSet
DSR054201
released
Annotation file set
: Accessible chromatin sites for Thymus medullary TEC (myoid Type IIa) (MYOG/MYPN/MYOT/MYH2+ (similar to TEC(myo) in Park et al); clusters with 14)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR571981
released
Annotation file set
: Accessible chromatin sites for Thymus CD8+ CD4+ thymocytes (PTPRC+; cycling (G2/M and S-assigned); clusters with 0/1; low CD8+)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR508743
released
Annotation file set
: Accessible chromatin sites for Thymus dendritic cells (FLT3+; high expresison of Park et al DC genes)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR309446
released
Annotation file set
: Accessible chromatin sites for Thymus CD8+ CD4+ thymocytes (PTPRC+; clusters with 1/3; low CD8+)
Lab:
AMP-T2D consortium
Project:
AMP