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Schema
Citing CMDGA
Clear Filters
Annotation type
2
gene expression
1
accessible chromatin
Annotation Category
2
Gene expression levels
1
cis-regulatory elements
Annotation type Category
2
RNA-seq
1
ATAC-seq
Available data
1
tsv
File set status
3
released
Genome assembly (visualization)
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
in vitro differentiated cells
Biosample term
19
monocyte
14
islet of Langerhans
11
EndoC_BH1
10
hepatocyte
10
macrophage
9
extended pluripotent stem (EPS) cells
9
pancreatic ductal cell
9
progenitor cell of endocrine pancreas
9
regulatory T cell
8
H1-hESC
8
T-helper 1 cell
8
T-helper 17 cell
8
neural progenitor cell
7
induced pluripotent stem cell
6
endothelial cell
6
lymphoblastoid cell line
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
pancreatic stellate cell
5
subcutaneous adipose tissue
4
T-helper 2 cell
4
endothelial cell of hepatic sinusoid
4
liver
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
putamen
3
CD8-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
T follicular helper cell
3
blood cell
3
brain
3
caudate nucleus
3
central memory CD8-positive, alpha-beta T cell
3
cerebellum
3
coronary artery
3
effector memory CD8-positive, alpha-beta T cell
3
frontal cortex
3
glomerular endothelial cell
3
hepatocyte(AFP)
3
memory B cell
3
naive B cel
3
omental fat pad
3
pancreatic quiescent stellate cell
3
right atrium auricular region
3
skin of body
3
substantia nigra
3
tibial nerve
2
B cell
2
CD4-positive helper T cell
2
T cell
2
adipose-derived stem cell
2
adrenal gland
2
amygdala
2
anterior cingulate cortex
2
articular chondrocyte
2
body of pancreas
2
cardiomyocytes (cardiac muscle cell)
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
embryonic stem cell
2
epithelial cell of proximal tubule
2
fibroblast
2
gamma-delta T cell
2
heart
2
heart left ventricle
2
hypothalamus
2
iPSC derived cell line
2
kidney glomerular epithelial cell
2
lung
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
minor salivary gland
2
muscle
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
natural killer cell
2
nucleus accumbens
2
ovary
2
pancreatic polypeptide-secreting cell
2
retina
2
skeletal muscle myoblast
2
smooth muscle cell of the coronary artery
2
spleen
2
stomach
2
testis
2
tibial artery
2
uterus
2
vagina
2
visceral abdominal adipose tissue
1
Ammon's horn
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
C1 segment of cervical spinal cord
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
HepG2
1
Leydig cell
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
Schwann cell
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
activated pancreatic stellate cell
1
adipose tissue
1
alternatively activated macrophage
1
aorta
1
aorta wall
1
aortic valve
1
astrocyte
1
bladder
1
breast
1
breast - mammary tissue
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cardiac precursors (cardiac muscle cell)
1
cardiac ventricle fibroblast
1
cells - EBV-transformed lymphocytes
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cerebellar hemisphere
1
cerebellum (Hemisphere)
1
cervix - ectocervix
1
cervix - endocervix
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
cortex
1
cortex of kidney
1
cytotoxic T cell
1
dendritic cell
Organ
1
epithelium
1
kidney
Life stage
1
adult
Date released
February, 2021
1
February, 2020
1
May, 2021
1
November, 2022
Software used
2
r
1
macs
Lab
2
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
3
AMP
RFA
2
AMP
1
AMP2
assembly!
hg19
month_released!
February, 2021
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR740DPX
released
Annotation file set
: Gene expression annotation of embryonic stem cell Undifferentiated ES cell from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR459YGB
released
Annotation file set
: Gene expression levels of Kidney podocytes from RNA-seq (GSE115961)
Lab:
AMP-T2D consortium
Project:
AMP