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Citing CMDGA
Clear Filters
Embeddings type
2
Accessible chromatin
Embeddings Category
2
umap
Underlying Assay
30
10X scRNA-seq
26
Smart-seq
3
10X snRNA-seq
2
10X snATAC-seq
2
sciATAC-seq
1
10X scATAC-seq
Available data
2
h5ad
1
mtx
1
tsv
File set status
2
released
Genome assembly (visualization)
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
1
primary cell
Biosample term
1
islet of Langerhans
1
pancreas
1
peripheral blood mononuclear cell
1
skeletal muscle tissue
Tissue term
1
blood
1
pancreas
1
skeletal muscle tissue
Organ
1
blood
1
bodily fluid
1
musculature of body
1
pancreas
Date released
1
August, 2021
1
May, 2022
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Xin Sun, UCSD
Project
1
AMP
1
T1D
RFA
1
AMP
1
T1D
assembly!
hg19
lab.title!
Xin Sun, UCSD
organ_slims!
intestine
Showing 2 of 2 results
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FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D