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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
chromatin state
Annotation Category
3
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
2
bed bed3+
2
bigWig
1
bed bed9
File set status
3
released
Genome assembly (visualization)
19
hg19
3
GRCh38
Organism
3
Homo sapiens
Biosample type
2
cell line
1
primary cell
Biosample term
100
monocyte
54
HeLa-S3
38
H1-hESC
27
neural progenitor cell
24
heart
22
K562
21
brain
20
stomach
19
HFFc6
18
A549
18
kidney
17
lung
17
muscle of arm
16
muscle of leg
16
small intestine
15
adrenal gland
15
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
12
coronary artery
12
heart left ventricle
11
right kidney
11
right lung
11
thymus
11
tibial nerve
10
hematopoietic multipotent progenitor cell
10
liver
10
renal cortex interstitium
10
renal pelvis
10
tibial artery
9
CD4-positive, alpha-beta memory T cell
9
caudate nucleus
9
left kidney
9
right atrium auricular region
8
B cell
8
ascending aorta
8
body of pancreas
8
cerebellum
8
frontal cortex
8
macrophage
8
omental fat pad
8
putamen
8
spinal cord
8
spleen
8
substantia nigra
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
adipose tissue
7
islet of Langerhans
7
left cardiac atrium
7
lymphocyte
7
subcutaneous adipose tissue
6
Ammon's horn
6
HepG2
6
T cell
6
heart right ventricle
6
hepatocyte
6
iPSC derived cell line
6
lymphoblastoid cell line
6
mononuclear cell
6
olfactory receptor cell
6
pancreas
5
MCF-7
5
amygdala
5
anterior cingulate cortex
5
endothelial cell of umbilical vein
5
hypothalamus
5
nucleus accumbens
5
ovary
5
regulatory T cell
5
retina
5
right lobe of liver
5
sigmoid colon
5
thyroid gland
5
transverse colon
5
trophoblast cell
4
C1 segment of cervical spinal cord
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
angular gyrus
4
aorta
4
cerebellum (Hemisphere)
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
foreskin keratinocyte
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
layer of hippocampus
4
left ventricle myocardium
4
muscle of trunk
4
natural killer cell
4
osteoblast
4
psoas muscle
4
skin of body
4
temporal lobe
4
testis
4
thoracic aorta
3
cardiac fibroblast
3
HCT116
3
Peyer's patch
3
blood cell
3
cardiac muscle cell
3
chorion membrane
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
left renal cortex interstitium
3
left renal pelvis
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic ductal cell
3
prostate gland
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
adipocyte
2
astrocyte
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
brain microvascular endothelial cell
2
breast epithelium
2
bronchial epithelial cell
2
cerebellar cortex
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
endothelial cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
esophagus squamous epithelium
2
eye
2
fibroblast
2
fibroblast of breast
2
fibroblast of the aortic adventitia
2
foreskin fibroblast
2
germinal matrix
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
hepatic stellate cell
2
keratinocyte
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
limb
2
lower leg skin
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
mucosa of rectum
2
muscle
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
occipital lobe
2
pancreatic acinar cell
2
pancreatic beta cell
2
pancreatic stellate cell
2
parathyroid adenoma
2
pons
2
renal cortical epithelial cell
2
retinal pigment epithelial cell
2
skeletal muscle cell
2
skeletal muscle myoblast
Organ
3
epithelium
2
kidney
1
pancreas
Life stage
2
child
Date released
1
January, 2020
1
November, 2019
1
September, 2022
Software used
2
macs
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
fibroblast of pulmonary artery
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR420PUK
released
Annotation file set
: Chromatin states for BSS00389 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855KHX
released
Annotation file set
: Accessible chromatin annotation of kidney podocytes (glomerular visceral epithelial cell) from GSE115961 DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR986YKL
released
Annotation file set
: Accessible chromatin annotation of EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP