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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
15
hg19
2
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
100
monocyte
22
fibroblast
19
macrophage
19
pericyte cell
18
endothelial cell
17
hepatocyte
16
endothelial cell of hepatic sinusoid
13
common myeloid progenitor, CD34-positive
13
smooth muscle cell
12
excitatory neuron
11
B cell
11
T cell
11
astrocyte
9
CD4-positive, alpha-beta memory T cell
7
CD8-positive, alpha-beta memory T cell
6
colon epithelial cell
6
fibroblast of cardiac tissue
6
keratinocyte
6
mononuclear cell
6
olfactory receptor cell
6
skeletal muscle satellite cell
5
cortical cell of adrenal gland
5
endothelial cell of umbilical vein
5
erythroblast
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
pancreatic acinar cell
5
regulatory T cell
5
type II pneumocyte
4
CD14-positive monocyte
4
T-helper 1 cell
T-helper 17 cell
4
T-helper 2 cell
4
blood vessel smooth muscle cell
4
enteric smooth muscle cell
4
foreskin keratinocyte
4
gabaergic neuron
4
glutamatergic neuron
4
natural killer cell
4
osteoblast
4
pancreatic beta cell
4
pancreatic ductal cell
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
trophoblast cell
3
cardiac fibroblast
3
CD4-positive helper T cell
3
blood cell
3
endocardial cell
3
endothelial cell of lymphatic vessel
3
enteric neuron
3
enterocyte
3
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
3
kidney tubule cell
3
mesothelial cell
3
microglial cell
3
naive T cell
3
neurosphere
3
neutrophil
3
oligodendrocyte precursor cell
3
pancreatic alpha cell
3
retinal pigment epithelial cell
3
schwann cell
3
skeletal muscle fiber
3
type I pneumocyte
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
Muller cell
2
alveolar macrophage
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
bronchial epithelial cell
2
cardiac endothelial cell
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
colon goblet cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
fat cell
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of the aortic adventitia
2
foveolar cell of stomach
2
glomerular endothelial cell
2
granular cell of epidermis
2
intestinal tuft cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
luteal cell
2
mast cell
2
mature NK T cell
2
melanocyte
2
memory B cell
2
mesangial cell
2
myoepithelial cell
2
myoepithelial cell of mammary gland
2
naive t cell
2
non keratinizing barrier epithelial cell
2
oligodendrocyte
2
pancreatic A cell
2
pancreatic delta cell
2
paneth cell
2
parietal cell
2
peptic cell
2
plasma cell
2
regular atrial cardiac myocyte
2
renal cortical epithelial cell
2
respiratory goblet cell
2
skeletal muscle cell
2
skeletal muscle fibroblast
2
skeletal muscle myoblast
2
small intestine goblet cell
2
smooth muscle cell of the brain vasculature
2
stomach neuroendocrine cell
2
stromal cell
2
thyroid follicular cell
2
type B pancreatic cell
2
type I cell of adrenal cortex
2
type I muscle cell
2
type II cell of adrenal cortex
2
type II muscle cell
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
CD1c-positive myeloid dendritic cell
1
Leydig cell
1
T follicular helper cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
aortic endothelial cell
1
astrocyte of the spinal cord
1
brain pericyte
1
cardiac muscle cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
enteroendocrine cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
foreskin melanocyte
1
gastric goblet cell
1
glial cell
1
glomerular visceral epithelial cell
1
goblet cell
1
helper T cell
1
hepatoblast
1
iris pigment epithelial cell
1
islet of Langerhans
1
lung microvascular endothelial cell
1
lung neuroendocrine cell
1
mammary stem cell
1
megakaryocyte
1
mesenchymal stem cell
1
metanephros
1
naive B cel
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
neuron
1
non-pigmented ciliary epithelial cell
1
parietal epithelial cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
pulmonary artery endothelial cell
1
regular cardiac myocyte
1
retinal bipolar neuron
1
sensory neuron
1
smooth muscle cell of the coronary artery
1
stromal cell of bone marrow
1
sympathetic neuron
1
trophoblast giant cell
1
ureteric bud
Date released
2
November, 2021
Software used
1
abc
1
macs
Lab
2
Bing Ren, UCSD
Project
2
ENCODE
RFA
2
ENCODE3
biosample_term_name!
T-helper 17 cell
organ_slims!
pericardium
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR550FOW
released
Annotation file set
: Target gene predictions of T lymphocyte 2 (CD4+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR058FXX
released
Annotation file set
: Accessible chromatin annotation of T lymphocyte 2 (CD4+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE