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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ATAC-seq
Available data
3
bed bed3+
3
bigWig
File set status
3
released
Genome assembly (visualization)
34
hg19
3
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
100
monocyte
51
HeLa-S3
37
H1-hESC
25
fibroblast
23
neural progenitor cell
22
endothelial cell
22
macrophage
20
pericyte cell
19
HFFc6
17
hepatocyte
16
K562
16
endothelial cell of hepatic sinusoid
15
smooth muscle cell
13
excitatory neuron
10
astrocyte
9
coronary artery
9
kidney
8
islet of Langerhans
7
T cell
7
putamen
7
right atrium auricular region
7
subcutaneous adipose tissue
7
tibial artery
7
tibial nerve
6
B cell
6
GM12878
6
H9
6
caudate nucleus
6
cerebellum
6
colon epithelial cell
6
endothelial cell of lymphatic vessel
6
frontal cortex
6
iPSC derived cell line
6
lymphoblastoid cell line
6
lymphocyte
6
olfactory receptor cell
6
omental fat pad
6
pancreatic acinar cell
6
pancreatic ductal cell
6
substantia nigra
5
Ammon's horn
5
HepG2
5
amygdala
5
anterior cingulate cortex
5
ascending aorta
5
cortical cell of adrenal gland
5
endocardial cell
5
erythroblast
5
hypothalamus
5
inhibitory neuron
5
mast cell
5
nucleus accumbens
5
type II pneumocyte
4
C1 segment of cervical spinal cord
4
CyT49
4
HUES8
4
blood vessel smooth muscle cell
4
body of pancreas
4
cerebellum (Hemisphere)
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
enteric smooth muscle cell
4
gabaergic neuron
4
gastrocnemius medialis(Muscle - Skeletal)
4
glutamatergic neuron
4
heart left ventricle
4
keratinocyte
4
left ventricle myocardium
4
luminal epithelial cell of mammary gland
4
natural killer cell
4
pancreas
4
pancreatic beta cell
4
right lobe of liver
4
skeletal muscle satellite cell
4
smooth muscle cell of the esophagus
3
cardiac fibroblast
3
CD4-positive helper T cell
3
adipocyte
3
blood cell
3
brain
3
enteric neuron
3
enterocyte
3
fibroblast of cardiac tissue
3
heart
3
hepatic stellate cell
3
liver
3
mesothelial cell
3
microglial cell
3
oligodendrocyte precursor cell
3
osteoblast
3
pancreatic A cell
3
pancreatic alpha cell
3
schwann cell
3
skeletal muscle fiber
3
skin of body
3
type B pancreatic cell
3
type I pneumocyte
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
HCT116
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
alveolar macrophage
2
basal cell
2
basal cell of epidermis
2
cardiac endothelial cell
2
cardiac muscle cell
2
cholangiocyte
2
ciliated cell
2
club cell
2
colon goblet cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
fat cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
granular cell of epidermis
2
intestinal tuft cell
2
luteal cell
2
mammary gland epithelial cell
2
mature NK T cell
2
melanocyte
2
memory B cell
2
mesangial cell
2
muscle
2
myoepithelial cell
2
naive t cell
2
neuronal stem cell
2
non keratinizing barrier epithelial cell
2
oligodendrocyte
2
pancreatic delta cell
2
pancreatic stellate cell
2
paneth cell
2
parietal cell
2
peptic cell
2
plasma cell
2
regular atrial cardiac myocyte
2
regular ventricular cardiac myocyte
2
regulatory T cell
2
respiratory goblet cell
2
retina
2
retinal pigment epithelial cell
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
smooth muscle cell of the coronary artery
2
spleen
2
stomach neuroendocrine cell
2
stromal cell
2
thyroid follicular cell
2
type I cell of adrenal cortex
2
type I muscle cell
2
type II cell of adrenal cortex
2
type II muscle cell
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
hindlimb muscle
1
EndoC_BH1
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
Leydig cell
1
Schwann cell
1
T follicular helper cell
1
T-helper 1 cell
1
T-helper 17 cell
1
T-helper 2 cell
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipose tissue
1
adrenal gland
1
aortic endothelial cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
brain pericyte
1
breast
1
cardiac precursors
1
cerebellar cortex
1
cerebellar hemisphere
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon sigmoid
1
cortex
1
cortex of kidney
1
dendritic cell
1
distal epiphysis
1
distal epiphysis of femur
Organ
3
epithelium
3
pancreas
Life stage
1
adult
Date released
2
November, 2021
1
October, 2019
Software used
chromhmm
3
macs
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
2
ENCODE
1
AMP
RFA
2
ENCODE3
1
AMP
software_used.software.name!
chromhmm
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR853JCR
released
Annotation file set
: Accessible chromatin annotation of Pancreatic Alpha Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR959HLG
released
Annotation file set
: Accessible chromatin annotation of Pancreatic Alpha Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR110ITH
released
Annotation file set
: Pancreatic alpha cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP