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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
48
hg19
2
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
100
monocyte
54
HeLa-S3
38
H1-hESC
27
neural progenitor cell
25
kidney
24
heart
22
K562
22
fibroblast
21
brain
20
stomach
19
HFFc6
19
macrophage
19
pericyte cell
18
A549
17
lung
17
muscle of arm
16
muscle of leg
16
small intestine
15
adrenal gland
14
smooth muscle cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
large intestine
13
left lung
13
muscle of back
12
coronary artery
12
heart left ventricle
11
B cell
11
T cell
11
astrocyte
11
right kidney
11
right lung
11
thymus
11
tibial nerve
10
hematopoietic multipotent progenitor cell
10
liver
10
renal cortex interstitium
10
renal pelvis
10
tibial artery
9
CD4-positive, alpha-beta memory T cell
9
caudate nucleus
9
left kidney
9
right atrium auricular region
8
ascending aorta
8
body of pancreas
8
cerebellum
8
frontal cortex
8
islet of Langerhans
8
omental fat pad
8
putamen
8
spinal cord
8
spleen
8
substantia nigra
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
adipose tissue
7
left cardiac atrium
7
lymphocyte
7
subcutaneous adipose tissue
6
Ammon's horn
6
HepG2
6
fibroblast of cardiac tissue
6
heart right ventricle
6
iPSC derived cell line
6
lymphoblastoid cell line
6
mononuclear cell
6
olfactory receptor cell
6
pancreas
6
skeletal muscle satellite cell
5
MCF-7
5
amygdala
5
anterior cingulate cortex
5
erythroblast
5
hypothalamus
5
inhibitory neuron
5
nucleus accumbens
5
ovary
5
regulatory T cell
5
retina
5
right lobe of liver
5
sigmoid colon
5
thyroid gland
5
transverse colon
4
C1 segment of cervical spinal cord
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
angular gyrus
4
aorta
4
blood vessel smooth muscle cell
4
cerebellum (Hemisphere)
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
enteric smooth muscle cell
4
gabaergic neuron
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
glutamatergic neuron
4
layer of hippocampus
4
left ventricle myocardium
4
muscle of trunk
4
natural killer cell
4
osteoblast
4
psoas muscle
4
skin fibroblast
4
skin of body
4
smooth muscle cell of the esophagus
4
temporal lobe
4
testis
4
thoracic aorta
3
cardiac fibroblast
CD4-positive helper T cell
3
HCT116
3
Peyer's patch
3
adipocyte
3
blood cell
3
cardiac muscle cell
3
endometrium adenocarcinoma
3
enteric neuron
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
left renal cortex interstitium
3
left renal pelvis
3
mesenchymal stem cell
3
microglial cell
3
naive T cell
3
neurosphere
3
neutrophil
3
oligodendrocyte precursor cell
3
prostate gland
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle fiber
3
skeletal muscle tissue
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
alveolar macrophage
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
cerebellar cortex
2
ciliated cell
2
cingulate gyrus
2
colon goblet cell
2
colonic mucosa
2
duodenal mucosa
2
endodermal cell
2
eye
2
fat cell
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of the aortic adventitia
2
foreskin fibroblast
2
germinal matrix
2
globus pallidus
2
intestinal tuft cell
2
limb
2
lower leg skin
2
luteal cell
2
mast cell
2
mature NK T cell
2
medulla oblongata
2
melanocyte
2
memory B cell
2
mesangial cell
2
midbrain
2
middle frontal gyrus
2
mucosa of rectum
2
muscle
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
naive t cell
2
neuron
2
occipital lobe
Date released
2
November, 2021
Software used
1
abc
1
macs
Lab
2
Bing Ren, UCSD
Project
2
ENCODE
RFA
2
ENCODE3
biosample_term_name!
CD4-positive helper T cell
organ_slims!
epithelium
extraembryonic component
Showing 2 of 2 results
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Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE