Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
chromatin state
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
snATAC-seq
Available data
1
bed bed3+
1
bed bed9
1
bigWig
File set status
2
released
Genome assembly (visualization)
22
hg19
2
GRCh38
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
primary cell
Biosample term
51
HeLa-S3
38
H1-hESC
27
neural progenitor cell
22
heart
22
kidney
21
brain
20
fibroblast
19
HFFc6
19
pericyte cell
18
endothelial cell
18
macrophage
17
muscle of arm
16
K562
16
lung
16
monocyte
16
muscle of leg
15
placenta
15
stomach
14
small intestine
13
excitatory neuron
13
large intestine
13
left lung
13
muscle of back
13
smooth muscle cell
11
astrocyte
11
right kidney
11
right lung
11
thymus
10
renal cortex interstitium
10
renal pelvis
9
adrenal gland
9
left kidney
8
hepatocyte
8
spinal cord
7
H9
7
T cell
7
colon epithelial cell
7
heart left ventricle
7
left cardiac atrium
7
lymphocyte
6
CD4-positive, alpha-beta memory T cell
6
GM12878
6
iPSC derived cell line
6
keratinocyte
6
lymphoblastoid cell line
6
olfactory receptor cell
6
pancreatic acinar cell
6
pancreatic ductal cell
5
B cell
5
HepG2
5
cortical cell of adrenal gland
5
endothelial cell of umbilical vein
5
erythroblast
5
fibroblast of cardiac tissue
5
heart right ventricle
5
inhibitory neuron
5
trophoblast cell
5
type II pneumocyte
4
CyT49
4
HUES8
4
T-helper 17 cell
4
blood vessel smooth muscle cell
4
chorionic villus
4
coronary artery
4
enteric smooth muscle cell
4
foreskin keratinocyte
4
gabaergic neuron
4
glutamatergic neuron
4
islet of Langerhans
4
liver
4
luminal epithelial cell of mammary gland
4
muscle of trunk
4
retina
4
skeletal muscle satellite cell
4
skin fibroblast
4
skin of body
4
smooth muscle cell of the esophagus
4
spleen
3
CD4-positive helper T cell
3
blood cell
3
cardiac muscle cell
3
chorion membrane
3
common myeloid progenitor, CD34-positive
3
endocardial cell
3
endothelial cell of lymphatic vessel
3
enteric neuron
3
enterocyte
3
left renal cortex interstitium
3
left renal pelvis
3
mammary gland epithelial cell
3
mesothelial cell
3
microglial cell
3
neurosphere
3
neutrophil
3
oligodendrocyte precursor cell
3
osteoblast
3
pancreatic A cell
3
pancreatic beta cell
3
regulatory T cell
3
retinal pigment epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle fiber
3
type B pancreatic cell
3
type I pneumocyte
2
cardiac fibroblast
2
22Rv1
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
CD8-positive, alpha-beta memory T cell
2
GM18507
2
HCT116
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T-helper 1 cell
2
T-helper 2 cell
2
adipocyte
2
alveolar macrophage
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
bronchial epithelial cell
2
cardiac endothelial cell
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
colon goblet cell
2
dermis lymphatic vessel endothelial cell
2
eccrine cell
2
endodermal cell
2
endothelial cell of hepatic sinusoid
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
eye
2
fat cell
2
fetal cardiomyocyte
2
fibroblast of dermis
2
fibroblast of lung
2
fibroblast of the aortic adventitia
2
foreskin fibroblast
2
foveolar cell of stomach
2
germinal matrix
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
granular cell of epidermis
2
intestinal tuft cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
limb
2
luteal cell
2
mast cell
2
mature NK T cell
2
melanocyte
2
memory B cell
2
mesangial cell
2
muscle
2
myoepithelial cell
2
naive t cell
2
neuron
2
non keratinizing barrier epithelial cell
2
oligodendrocyte
2
ovary
2
pancreatic alpha cell
2
pancreatic delta cell
2
pancreatic stellate cell
2
paneth cell
2
parietal cell
2
peptic cell
2
plasma cell
2
putamen
2
regular atrial cardiac myocyte
2
renal cortical epithelial cell
2
respiratory goblet cell
2
right atrium auricular region
2
skeletal muscle cell
2
skeletal muscle fibroblast
2
small intestine goblet cell
2
smooth muscle cell of the brain vasculature
2
smooth muscle cell of the coronary artery
2
stomach neuroendocrine cell
2
stromal cell
2
subcutaneous adipose tissue
2
substantia nigra
2
testis
2
thyroid follicular cell
2
tibial artery
2
tibial nerve
2
tongue
2
trophoblast
2
type I cell of adrenal cortex
2
type I muscle cell
2
type II cell of adrenal cortex
Organ
2
connective tissue
Life stage
adult
1
unknown
Date released
1
November, 2021
1
September, 2022
Software used
1
chromhmm
1
macs
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
1
AMP
1
ENCODE
RFA
1
AMP
1
ENCODE3
biosample_term_name!
pituitary stalk
sigmoid colon
relevant_life_stage!
adult
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE