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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
2
eQTL
1
accessible chromatin
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
2
ChIP-seq
2
RNA-seq
1
DNase-seq
Available data
2
bed bed9
1
bed bed3+
1
bigWig
1
tsv
File set status
5
released
Genome assembly (visualization)
9
hg19
5
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
100
monocyte
54
HeLa-S3
38
H1-hESC
27
neural progenitor cell
25
kidney
23
heart
22
K562
22
fibroblast
21
brain
20
stomach
19
HFFc6
19
endothelial cell
19
macrophage
19
pericyte cell
18
A549
18
hepatocyte
17
lung
17
muscle of arm
16
endothelial cell of hepatic sinusoid
16
muscle of leg
16
small intestine
15
adrenal gland
15
placenta
14
smooth muscle cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
large intestine
13
left lung
13
muscle of back
12
heart left ventricle
11
B cell
11
T cell
11
astrocyte
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
10
liver
10
renal cortex interstitium
10
renal pelvis
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
coronary artery
9
left kidney
8
spinal cord
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
adipose tissue
7
colon epithelial cell
7
left cardiac atrium
7
lymphocyte
7
tibial nerve
6
HepG2
6
caudate nucleus
6
fibroblast of cardiac tissue
6
heart right ventricle
6
iPSC derived cell line
6
islet of Langerhans
6
keratinocyte
6
lymphoblastoid cell line
6
mononuclear cell
6
olfactory receptor cell
6
pancreas
6
pancreatic acinar cell
6
pancreatic ductal cell
6
right atrium auricular region
6
skeletal muscle satellite cell
6
tibial artery
5
MCF-7
5
ascending aorta
5
body of pancreas
5
cerebellum
5
cortical cell of adrenal gland
5
erythroblast
5
frontal cortex
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
omental fat pad
5
ovary
5
putamen
5
regulatory T cell
5
retina
5
sigmoid colon
5
substantia nigra
5
thyroid gland
5
transverse colon
5
trophoblast cell
5
type II pneumocyte
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
angular gyrus
4
aorta
4
blood vessel smooth muscle cell
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
enteric smooth muscle cell
4
foreskin keratinocyte
4
gabaergic neuron
4
gastrocnemius medialis
4
glutamatergic neuron
4
layer of hippocampus
4
muscle of trunk
4
natural killer cell
4
osteoblast
4
pancreatic beta cell
4
psoas muscle
4
skin fibroblast
4
skin of body
4
smooth muscle cell of the esophagus
4
subcutaneous adipose tissue
4
temporal lobe
4
testis
4
thoracic aorta
3
cardiac fibroblast
3
Ammon's horn
3
CD4-positive helper T cell
3
HCT116
3
Peyer's patch
3
adipocyte
3
blood cell
3
cardiac muscle cell
3
chorion membrane
3
endocardial cell
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enteric neuron
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
left renal pelvis
3
mesenchymal stem cell
3
mesothelial cell
3
microglial cell
3
naive T cell
3
neurosphere
3
neutrophil
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic alpha cell
3
prostate gland
3
retinal pigment epithelial cell
3
right cardiac atrium
3
right renal pelvis
3
schwann cell
3
skeletal muscle fiber
3
skeletal muscle tissue
3
type B pancreatic cell
3
type I pneumocyte
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
alveolar macrophage
2
amygdala
2
anterior cingulate cortex
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
breast epithelium
2
bronchial epithelial cell
2
cardiac endothelial cell
2
cerebellar cortex
2
choroid plexus epithelial cell
2
ciliated cell
2
cingulate gyrus
2
club cell
2
colon goblet cell
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
eccrine cell
2
endodermal cell
Organ
5
brain
Life stage
4
adult
Date released
March, 2020
2
September, 2022
1
February, 2020
1
January, 2020
1
January, 2022
Software used
2
chromhmm
1
gtex_eqtl:V8
1
macs
1
qTLtools
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
month_released!
March, 2020
May, 2020
Showing 5 of 5 results
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Download
FileSet
DSR430YYK
released
Annotation file set
: Chromatin states for BSS00371 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR968XUX
released
Annotation file set
: Chromatin states for BSS00369 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR457BDA
released
Annotation file set
: brain frontal cortex eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR496IKQ
released
Annotation file set
: eQTL of frontal cortex for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR423PZC
released
Annotation file set
: Accessible chromatin annotation of brain frontal cortex from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP