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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
3
bed bed9
1
bigBed bed9
File set status
3
released
Genome assembly (visualization)
18
hg19
3
GRCh38
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
primary cell
Biosample term
100
monocyte
54
HeLa-S3
38
H1-hESC
27
neural progenitor cell
25
kidney
24
heart
22
K562
22
fibroblast
21
brain
20
stomach
19
HFFc6
19
endothelial cell
19
macrophage
18
A549
18
pericyte cell
17
hepatocyte
17
lung
17
muscle of arm
16
endothelial cell of hepatic sinusoid
16
muscle of leg
16
small intestine
15
adrenal gland
15
placenta
14
smooth muscle cell
13
large intestine
13
left lung
13
muscle of back
12
coronary artery
12
excitatory neuron
12
heart left ventricle
11
right kidney
11
right lung
11
thymus
11
tibial nerve
10
T cell
10
astrocyte
10
common myeloid progenitor, CD34-positive
10
liver
10
renal cortex interstitium
10
renal pelvis
10
tibial artery
9
B cell
9
caudate nucleus
9
hematopoietic multipotent progenitor cell
9
left kidney
9
right atrium auricular region
8
ascending aorta
8
body of pancreas
8
cerebellum
8
frontal cortex
8
islet of Langerhans
8
omental fat pad
8
putamen
8
spinal cord
8
spleen
8
substantia nigra
7
GM12878
7
H9
7
adipose tissue
7
left cardiac atrium
7
lymphocyte
7
subcutaneous adipose tissue
6
Ammon's horn
6
HepG2
6
colon epithelial cell
6
heart right ventricle
6
iPSC derived cell line
6
lymphoblastoid cell line
6
olfactory receptor cell
6
pancreas
6
pancreatic acinar cell
6
pancreatic ductal cell
6
skeletal muscle satellite cell
5
CD8-positive, alpha-beta memory T cell
5
MCF-7
5
amygdala
5
anterior cingulate cortex
5
cortical cell of adrenal gland
5
endothelial cell of umbilical vein
5
erythroblast
5
fibroblast of cardiac tissue
5
hypothalamus
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mononuclear cell
5
nucleus accumbens
5
ovary
retina
5
right lobe of liver
5
sigmoid colon
5
thyroid gland
5
transverse colon
5
trophoblast cell
5
type II pneumocyte
4
C1 segment of cervical spinal cord
4
CyT49
4
HUES8
4
angular gyrus
4
aorta
4
blood vessel smooth muscle cell
4
cerebellum (Hemisphere)
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
enteric smooth muscle cell
4
foreskin keratinocyte
4
gabaergic neuron
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
glutamatergic neuron
4
keratinocyte
4
layer of hippocampus
4
left ventricle myocardium
4
mammary gland epithelial cell
4
muscle of trunk
4
natural killer cell
4
pancreatic beta cell
4
psoas muscle
4
regulatory T cell
4
skin fibroblast
4
skin of body
4
smooth muscle cell of the esophagus
4
temporal lobe
4
testis
4
thoracic aorta
3
CD14-positive monocyte
3
CD4-positive helper T cell
3
CD4-positive, alpha-beta memory T cell
3
HCT116
3
Peyer's patch
T-helper 1 cell
3
T-helper 2 cell
3
blood cell
3
cardiac muscle cell
3
endocardial cell
3
endocrine pancreas
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enteric neuron
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
left renal cortex interstitium
3
left renal pelvis
3
mesenchymal stem cell
3
mesothelial cell
3
microglial cell
3
neurosphere
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic alpha cell
3
prostate gland
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle fiber
3
type B pancreatic cell
3
type I pneumocyte
3
upper lobe of left lung
3
vagina
2
cardiac fibroblast
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
adipocyte
2
alveolar macrophage
2
basal cell
2
basal cell of epidermis
2
breast epithelium
2
cardiac endothelial cell
2
cerebellar cortex
2
chorion membrane
2
ciliated cell
2
cingulate gyrus
2
club cell
2
colon goblet cell
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
duodenal mucosa
2
eccrine cell
2
endodermal cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
esophagus squamous epithelium
2
eye
2
fat cell
Organ
3
connective tissue
Life stage
2
adult
1
embryonic
Date released
2
September, 2022
1
October, 2019
Software used
3
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
T-helper 1 cell
retina
relevant_life_stage!
unknown
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR073XBJ
released
Annotation file set
: Chromatin states for BSS01261 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP