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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
1
chromatin state
Annotation Category
5
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
snATAC-seq
1
ChIP-seq
Available data
4
bed bed3+
4
bigWig
1
bed bed9
File set status
5
released
Genome assembly (visualization)
20
hg19
5
GRCh38
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
Biosample term
100
monocyte
54
HeLa-S3
38
H1-hESC
27
neural progenitor cell
25
fibroblast
25
kidney
24
heart
22
K562
22
endothelial cell
22
macrophage
21
brain
21
pericyte cell
20
stomach
19
HFFc6
19
hepatocyte
18
A549
17
lung
muscle of arm
16
endothelial cell of hepatic sinusoid
16
muscle of leg
16
small intestine
16
smooth muscle cell
15
adrenal gland
15
placenta
14
B cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
large intestine
13
left lung
13
muscle of back
12
heart left ventricle
11
T cell
11
astrocyte
11
right kidney
11
right lung
11
thymus
hematopoietic multipotent progenitor cell
10
liver
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
coronary artery
9
left kidney
8
islet of Langerhans
8
spinal cord
8
spleen
8
tibial nerve
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
adipose tissue
7
colon epithelial cell
7
left cardiac atrium
7
lymphocyte
7
natural killer cell
7
tibial artery
6
HepG2
6
caudate nucleus
6
endothelial cell of lymphatic vessel
6
fibroblast of cardiac tissue
6
heart right ventricle
6
iPSC derived cell line
6
keratinocyte
6
lymphoblastoid cell line
6
mononuclear cell
6
olfactory receptor cell
6
pancreas
6
pancreatic acinar cell
6
pancreatic ductal cell
6
right atrium auricular region
6
skeletal muscle satellite cell
5
MCF-7
5
adipocyte
5
ascending aorta
5
body of pancreas
5
cerebellum
5
cortical cell of adrenal gland
5
endocardial cell
5
endothelial cell of umbilical vein
5
erythroblast
5
frontal cortex
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
mast cell
5
omental fat pad
5
ovary
5
putamen
5
regulatory T cell
5
retina
5
sigmoid colon
5
substantia nigra
5
thyroid gland
5
transverse colon
5
trophoblast cell
5
type II pneumocyte
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
angular gyrus
4
aorta
4
blood vessel smooth muscle cell
4
chorionic villus
4
endocrine pancreas
4
enteric smooth muscle cell
4
foreskin keratinocyte
4
gabaergic neuron
4
gastrocnemius medialis
4
glutamatergic neuron
4
hepatic stellate cell
4
layer of hippocampus
4
muscle of trunk
4
osteoblast
4
pancreatic beta cell
4
psoas muscle
4
skin fibroblast
4
skin of body
4
smooth muscle cell of the esophagus
4
subcutaneous adipose tissue
4
temporal lobe
4
testis
4
thoracic aorta
3
cardiac fibroblast
3
Ammon's horn
3
CD4-positive helper T cell
3
HCT116
3
Peyer's patch
3
blood cell
3
cardiac muscle cell
3
chorion membrane
3
endometrium adenocarcinoma
3
enteric neuron
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of dermis
3
fibroblast of lung
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
left renal cortex interstitium
3
left renal pelvis
3
mesenchymal stem cell
3
mesothelial cell
3
microglial cell
3
naive T cell
3
neurosphere
3
neutrophil
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic alpha cell
3
prostate gland
3
retinal pigment epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle fiber
3
skeletal muscle tissue
3
type B pancreatic cell
3
type I pneumocyte
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
alveolar macrophage
2
amygdala
2
anterior cingulate cortex
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
breast epithelium
2
bronchial epithelial cell
2
cardiac endothelial cell
2
cerebellar cortex
2
cholangiocyte
2
choroid plexus epithelial cell
2
ciliated cell
2
cingulate gyrus
2
club cell
2
colon goblet cell
2
colonic mucosa
2
dermis blood vessel endothelial cell
Organ
4
epithelium
4
pancreas
Life stage
1
adult
1
embryonic
1
newborn
Date released
2
November, 2021
2
October, 2019
1
September, 2022
Software used
4
macs
1
chromhmm
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
Project
3
AMP
2
ENCODE
RFA
3
AMP
2
ENCODE3
biosample_term_name!
hematopoietic multipotent progenitor cell
muscle of arm
month_released!
March, 2020
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR276TNF
released
Annotation file set
: Accessible chromatin annotation of Pancreatic Beta Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR530GKK
released
Annotation file set
: Accessible chromatin annotation of Pancreatic Beta Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR112LAM
released
Annotation file set
: Pancreatic beta cell accessible chromatin annotation of overlapping ATAC-seq sites from 2 children samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR616QUT
released
Annotation file set
: Pancreatic beta cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP