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Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
2
bed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
12
hg19
4
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
6
keratinocyte
4
foreskin keratinocyte
4
skin fibroblast
3
fibroblast of dermis
2
basal cell of epidermis
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
foreskin fibroblast
2
granular cell of epidermis
2
lower leg skin
1
COLO829
1
GM23248
1
RPMI7951
1
SK-MEL-5
1
epidermal melanocyte
1
iPS DF 19.11
1
iPS DF 19.7
1
iPS DF 4.7 Cell Line
1
iPS DF 6.9
1
iPS-11a
1
iPS-15b
1
iPS-18a
1
iPS-18c
1
iPS-20b
1
skin of body
Organ
4
connective tissue
4
skin of body
Life stage
2
embryonic
Date released
2
November, 2021
2
September, 2022
Software used
2
chromhmm
1
abc
1
macs
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
2
AMP
2
ENCODE
RFA
2
AMP
2
ENCODE3
month_released!
January, 2022
Showing 4 of 4 results
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Download
FileSet
DSR253KGL
released
Annotation file set
: Chromatin states for BSS01583 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR378XAB
released
Annotation file set
: Chromatin states for BSS00346 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR734CMY
released
Annotation file set
: Target gene predictions of Fibroblast (Epithelial) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR579NBW
released
Annotation file set
: Accessible chromatin annotation of Fibroblast (Epithelial) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE