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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
chromatin state
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
ChIP-seq
Available data
1
bed bed3+
1
bed bed9
1
bigWig
File set status
2
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
2
Homo sapiens
Biosample type
1
cell line
1
tissue
Biosample term
1
ACC112
1
kidney
Disease term
18
lung epithelial-myoepithelial carcinoma
8
Philadelphia-positive myelogenous leukemia
6
large-cell immunoblastic lymphoma
5
breast cancer
5
colorectal adenocarcinoma
5
neuroblastoma
4
anosmia
4
prostate adenocarcinoma
3
acute lymphoblastic leukemia
3
cervical adenocarcinoma
3
endometrium adenocarcinoma
3
glioblastoma
3
hepatocellular carcinoma
3
parathyroid gland clear cell adenoma
2
Burkitt lymphoma
2
acute promyelocytic leukemia
2
breast ductal adenocarcinoma
2
diabetes mellitus,hypertensive disorder
2
melanoma
2
osteosarcoma
2
plasma cell myeloma
2
renal cell adenocarcinoma
1
Ewing sarcoma
1
adenoid cystic carcinoma
1
chronic kidney disease
1
clear cell renal carcinoma
1
colon carcinoma
1
fibrosarcoma
1
glioma
1
hypertensive disorder
1
hypertensive disorder, chronic kidney disease
1
lung adenocarcinoma
1
lung large cell carcinoma
1
metastatic melanoma
1
pancreatic adenocarcinoma
1
pancreatic ductal adenocarcinoma
1
prostate cancer
1
prostate carcinoma
1
retinoblastoma
1
squamous cell carcinoma
1
testicular embryonal carcinoma
Organ
1
kidney
1
mouth
Life stage
1
adult
Date released
1
August, 2021
1
September, 2022
Software used
1
chromhmm
1
macs
Lab
1
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
2
AMP
RFA
1
AMP
1
AMP2
organ_slims!
vagina
Showing 2 of 2 results
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Download
FileSet
DSR981JBX
released
Annotation file set
: Chromatin states for BSS00036 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR937TUB
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for chronic kidney disease group
Lab:
Katalin Susztak, Upenn
Project:
AMP