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Getting started
Schema
Clear Filters
Annotation type
1946
target gene predictions
861
chromatin state
727
accessible chromatin
126
eQTL
105
histone modifications
72
Fine-mapped variants
38
candidate regulatory elements
9
gene expression
7
caQTL
6
binding sites
Annotation Category
1946
Target gene links
1737
cis-regulatory elements
205
Genetic variant effects
9
Gene expression levels
Annotation type Category
1525
DNase-seq
972
ChIP-seq
271
snATAC-seq
210
ATAC-seq
207
RNA-seq
174
HiC
Available data
2924
bed bed3+
856
bed bed9
382
bigWig
106
tsv
31
bigBed bed9
12
bed bed3
12
bed narrowPeak
File set status
3896
released
1
revoked
Genome assembly (visualization)
6940
hg19
3897
GRCh38
4
hg18
Organism
3896
Homo sapiens
Biosample type
1826
primary cell
1398
tissue
564
cell line
109
in vitro differentiated cells
Biosample term
100
monocyte
86
head of caudate nucleus
73
fibroblast
62
T-cell
58
HeLa-S3
57
dorsolateral prefrontal cortex
55
stimulated activated CD4-positive, alpha-beta T cell
51
CD4-positive, alpha-beta T cell
48
posterior cingulate gyrus
42
endothelial cell
42
heart
42
macrophage
41
stomach
40
smooth muscle cell
39
kidney
38
H1-hESC
37
brain
37
placenta
34
muscle of arm
32
A549
31
lung
30
activated CD4-positive, alpha-beta T cell
30
adrenal gland
29
K562
29
hepatocyte
29
muscle of leg
29
small intestine
28
glutamatergic neuron
28
left lung
28
muscle of back
28
neural progenitor cell
27
large intestine
27
stimulated activated CD8-positive, alpha-beta memory T cell
25
common myeloid progenitor, CD34-positive
24
CD8-positive, alpha-beta T cell
23
astrocyte
22
GABAergic neuron
22
heart left ventricle
22
hematopoietic multipotent progenitor cell
22
right lung
21
pericyte cell
21
renal cortex interstitium
21
right kidney
20
B cell
20
HFFc6
20
renal pelvis
20
thymus
19
HCT116
18
keratinocyte
18
left kidney
16
endothelial cell of hepatic sinusoid
16
heart right ventricle
16
naive thymus-derived CD4-positive, alpha-beta T cell
15
activated CD8-positive, alpha-beta memory T cell
15
activated T-cell
15
pericyte
14
CD4-positive, alpha-beta memory T cell
14
H9
14
coronary artery
14
naive thymus-derived CD8-positive, alpha-beta T cell
14
natural killer cell
14
ovary
14
pancreas
14
spinal cord
13
T-helper 1 cell
13
T-helper 2 cell
13
excitatory neuron
13
tibial nerve
12
CD14-positive monocyte
12
MCF-7
12
T cell
12
body of pancreas
12
endothelial cell of lymphatic vessel
12
liver
12
spleen
12
thyroid follicular cell
12
tibial artery
11
CD8-positive, alpha-beta memory T cell
11
T-helper 17 cell
11
erythroblast
10
ascending aorta
10
caudate nucleus
10
cell of skeletal muscle
10
frontal cortex
10
gastrocnemius medialis
10
omental fat pad
10
progenitor cell
9
cerebellum
9
endocardial cell
9
left cardiac atrium
9
psoas muscle
9
putamen
9
right atrium auricular region
9
upper lobe of left lung
8
GM12878
8
HepG2
8
adrenal gland glandular cell
8
islet of Langerhans
8
medium spiny neuron
8
muscle precursor cell
8
naive B cell
8
right lobe of liver
8
thyroid gland
8
transverse colon
8
trophoblast cell
7
Ammon's horn
7
L2/3 intratelencephalic projecting glutamatergic neuron
7
Peyer's patch
7
activated naive CD4-positive, alpha-beta T cell
7
adipocyte
7
adipose tissue
7
colon epithelial cell
7
endothelial cell of umbilical vein
7
hepatic stellate cell
7
left renal cortex interstitium
7
left renal pelvis
7
lymphocyte
7
megakaryocyte
7
mesothelial cell
7
muscle of trunk
7
oligodendrocyte
7
regular ventricular cardiac myocyte
7
retina
7
sigmoid colon
7
substantia nigra
7
testis
6
L6 intratelencephalic projecting glutamatergic neuron
6
aorta
6
cardiac muscle cell
6
dermis blood vessel endothelial cell
6
double-positive, alpha-beta thymocyte
6
endothelial cell of vascular tree
6
fibroblast of cardiac tissue
6
foreskin fibroblast
6
foreskin keratinocyte
6
iPSC derived cell line
6
lymphoblastoid cell line
6
melanocyte
6
mononuclear cell
6
olfactory receptor cell
6
oligodendrocyte precursor cell
6
pancreatic acinar cell
6
pancreatic ductal cell
6
regular atrial cardiac myocyte
6
right renal pelvis
6
sst GABAergic interneuron
6
suppressor macrophage
5
CD4-positive, CD25-positive, alpha-beta regulatory T cell
5
L5 intratelencephalic projecting glutamatergic neuron
5
LNCaP clone FGC
5
Schwann cell
5
T47D
5
amygdala
5
anterior cingulate cortex
5
cortical cell of adrenal gland
5
enteric neuron
5
fibroblast of lung
5
hypothalamus
5
inflammatory macrophage
5
inhibitory neuron
5
kidney tubule cell
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
mast cell
5
nucleus accumbens
5
osteoblast
5
regulatory T cell
5
retinal pigment epithelial cell
5
right cardiac atrium
5
skeletal muscle satellite cell
5
sncg GABAergic interneuron
5
stromal cell
5
subcutaneous adipose tissue
4
B Cell
4
C1 segment of cervical spinal cord
4
CyT49
4
GM03348
4
HUES8
4
Ishikawa
4
L2/3-6 intratelencephalic projecting glutamatergic cortical neuron
4
L4 intratelencephalic projecting glutamatergic neuron
4
SK-N-DZ
4
SK-N-SH
4
activated T-helper 1 cell
4
activated naive CD8-positive, alpha-beta T cell
4
angular gyrus
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
breast epithelium
4
bronchial epithelial cell
4
central memory CD4-positive, alpha-beta T cell
4
cerebellum (Hemisphere)
4
chorionic villus
4
colonic mucosa
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
embryonic blood vessel endothelial progenitor cell
4
endocrine pancreas
4
endodermal cell
4
enteric smooth muscle cell
4
epithelial cell of esophagus
Organ
574
blood
570
brain
235
epithelium
212
heart
209
lung
192
kidney
148
intestine
139
skin of body
128
connective tissue
115
liver
111
muscle organ
100
musculature of body
95
large intestine
87
blood vessel
87
vasculature
80
embryo
79
pancreas
78
limb
68
eye
68
uterus
65
extraembryonic component
56
thymus
54
adrenal gland
54
stomach
53
bodily fluid
43
placenta
38
bone element
37
mammary gland
37
small intestine
37
spleen
33
artery
31
thyroid gland
27
adipose tissue
27
gonad
25
ureter
23
prostate gland
19
spinal cord
17
esophagus
16
ovary
15
skeleton
11
nerve
11
testis
10
penis
lymph node
7
mouth
6
lymphoid tissue
6
vein
5
breast
5
lymphatic vessel
5
urinary bladder
5
vagina
4
bronchus
4
tongue
2
bone marrow
1
embryonic structure
1
gallbladder
1
nose
1
pituitary gland
Life stage
665
adult
417
fetal
351
embryonic
103
unknown
35
child
20
newborn
Date released
1984
July, 2026
831
September, 2022
333
November, 2021
216
February, 2024
105
January, 2022
97
May, 2021
72
March, 2020
68
January, 2020
38
May, 2024
33
August, 2021
25
February, 2020
13
November, 2019
13
October, 2019
12
July, 2025
11
February, 2021
11
May, 2020
9
May, 2019
7
April, 2019
6
February, 2023
6
May, 2022
3
September, 2018
2
November, 2020
2
October, 2022
Software used
861
chromhmm
506
macs
111
abc
102
qTLtools
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
9
salmon
5
rasqual
2
matrix-eQTL
1
bedops
1
pepatac
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
3457
AMP-T2D consortium
339
Bing Ren, UCSD
50
Kyle Gaulton, UCSD
24
Ines Cebola, Imperial College London
12
Stephen Parker, UMich
7
Katalin Susztak, Upenn
5
Patrick T. Ellinor, Broad
3
Stephen S. Rich Lab @UVA
Project
3561
AMP
333
ENCODE
3
T1D
Collection Tags
1458
ENCODE-rE2G
825
EpiMap
393
HDMA
385
AMP
357
T2DKP
201
T1D
174
4DN
133
CATlas
101
T2D
101
eQTLCatalogue
97
BLUEPRINT
96
GTEx
64
DGA
26
FNIH_projects-heart
24
T2DKP
12
FNIH_projects-liver
12
HPAP
6
CMDGA
6
ENCODE
RFA
3474
AMP
333
ENCODE3
87
AMP2
3
T1D
organ_slims!
lymph node
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