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Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
2
binding sites
1
accessible chromatin
1
histone modifications
1
target gene predictions
Annotation Category
7
cis-regulatory elements
1
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
112
monocyte
55
HeLa-S3
48
CD8-positive, alpha-beta T cell
43
H1-hESC
32
kidney
31
endothelial cell
31
neural progenitor cell
30
fibroblast
30
heart
29
retina
27
stomach
24
islet of Langerhans
23
K562
23
liver
22
brain
22
macrophage
21
smooth muscle cell
20
breast cancer cell
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
19
adipocyte
19
muscle of arm
19
muscle of leg
19
pericyte cell
18
B cell
18
adrenal gland
18
hepatocyte
18
lung
17
heart left ventricle
17
large intestine
17
placenta
17
small intestine
16
embryonic stem cell
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
15
keratinocyte
15
muscle of back
15
pancreatic ductal cell
14
cardiac muscle cell
14
thymus
13
GM12878
13
H9
13
left lung
13
pancreas
13
renal cortex interstitium
13
renal pelvis
13
retinal pigment epithelial cell
13
spinal cord
13
spleen
13
subcutaneous adipose tissue
12
EndoC_BH1
12
astrocyte
12
endothelial cell of umbilical vein
12
excitatory neuron
12
foreskin fibroblast
12
hematopoietic multipotent progenitor cell
12
mammary epithelial cell
12
neuroblastoma cell
12
right lung
12
tibial nerve
11
MCF-7
11
coronary artery
11
endothelial cell of hepatic sinusoid
11
erythroblast
11
mesenchymal stem cell
11
pancreatic acinar cell
11
pancreatic beta cell
11
tibial artery
10
Rhabdomyosarcoma
10
T cell
10
gastric cancer cell
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
neuronal stem cell
10
osteoblast
9
HepG2
9
adipose tissue
9
caudate nucleus
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
natural killer cell
9
right kidney
9
substantia nigra
8
A549
8
Ammon's horn
8
B-lymphoblastoid cell line
8
body of pancreas
8
fibroblast cell line
8
foreskin keratinocyte
8
heart right ventricle
8
pancreatic alpha cell
8
pancreatic delta cell
8
pituitary stalk
8
putamen
8
right atrium auricular region
8
skeletal muscle fiber
8
skeletal muscle myoblast
8
skeletal muscle satellite cell
7
Jurkat
7
esophageal adenocarcinoma
7
left cardiac atrium
7
mature neutrophil
7
omental fat pad
7
regulatory T cell
6
Chondroid Chordoma
6
HEK293
6
HUES8
6
IMR-90
6
LNCAP
6
Rh-4 cell
6
SGBS preadipocytes
6
T-helper 1 cell
6
ascending aorta
6
bronchial epithelial cell
6
chondrocyte
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
frontal cortex
6
hESC cell
6
left kidney
6
lymphocyte
6
mammary gland epithelial cell
6
neuroblastoma cell line
6
neutrophil
6
sigmoid colon
6
testis
6
trophoblast cell
6
type I muscle cell
6
upper lobe of left lung
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
CD4-positive, alpha-beta memory T cell
5
CyT49
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM19240
5
HAP-1
5
HCT-116 cell
5
HL-60
5
HT-29
5
KARPAS-422 cell
5
MM.1S
5
OCI-LY7
5
PC-9
5
Peyer's patch
5
SK-N-MC
5
acute myeloid leukemia
5
choroid plexus epithelial cell
5
enterocyte
5
glutamatergic neuron
5
hepatic stellate cell
5
lymphoblastoid cell line
5
mesendoderm
5
osteosarcoma
5
ovary
5
prostate cancer cell line
5
right lobe of liver
5
skin fibroblast
5
temporal lobe
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
BE(2)-C
4
BJ cell
4
C1 segment of cervical spinal cord
4
CD1c-positive myeloid dendritic cell
4
CMK
4
COLO205
4
Caco-2 cell
4
GM12873
4
GM12875
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
GM23248
4
HAC cell
4
HBMEC cell
4
HS-SY-2 cell
4
Ishikawa
4
LHCN-M2
4
LoVo cell
4
MDA-MB-231 cell
4
MG63
4
Mantle cell lymphoma
4
NCCIT cell
4
NHEK
4
PANC-1 cell
4
PC-3
4
RPMI8226
4
SW480
4
T-cell
Organ
8
lung
Life stage
3
adult
Date released
September, 2022
5
February, 2021
1
June, 2020
1
May, 2021
1
October, 2022
Software used
3
encode-ccres
3
macs
1
abc
1
chromhmm
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
naive T cell
month_released!
August, 2020
September, 2022
Showing 8 of 8 results
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Download
FileSet
DSR259UTD
released
Annotation file set
: Binding sites annotation for A549 (A549) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR641NTB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR496BBN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR885NAO
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR761KYR
released
Annotation file set
: Histone modifications annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR378GKW
released
Annotation file set
: Binding sites annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR510YWQ
released
Annotation file set
: enhancer-gene predicton of A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR008HJP
released
Annotation file set
: Accessible chromatin annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP