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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
candidate regulatory elements
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
40
stomach
38
heart
37
A549
32
brain
32
lung
32
muscle of arm
31
small intestine
30
adrenal gland
29
placenta
28
kidney
27
common myeloid progenitor, CD34-positive
27
large intestine
27
muscle of leg
26
left lung
26
muscle of back
23
CD14-positive monocyte
23
thymus
22
right lung
20
hematopoietic multipotent progenitor cell
20
right kidney
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
renal cortex interstitium
18
renal pelvis
17
B cell
16
liver
15
spinal cord
14
CD8-positive, alpha-beta memory T cell
13
K562
13
adipose tissue
13
spleen
12
mononuclear cell
12
trophoblast cell
11
MCF-7
11
pericyte cell
11
sigmoid colon
10
heart left ventricle
10
pituitary stalk
9
adipocyte
9
body of pancreas
9
gastrocnemius medialis
9
muscle of trunk
9
ovary
9
psoas muscle
9
smooth muscle cell
9
thyroid gland
9
transverse colon
8
T cell
8
chorionic villus
8
endocrine pancreas
8
foreskin keratinocyte
8
neural progenitor cell
7
HeLa-S3
7
endothelial cell
7
fibroblast of cardiac tissue
7
fibroblast of dermis
7
fibroblast of lung
7
keratinocyte
7
mammary gland epithelial cell
7
natural killer cell
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
caudate nucleus
6
chorion membrane
6
dendritic cell
6
endometrium adenocarcinoma
6
heart right ventricle
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
layer of hippocampus
6
mesenchymal stem cell
6
naive T cell
6
neurosphere
6
regulatory T cell
6
retina
6
skeletal muscle tissue
6
testis
6
tibial nerve
6
upper lobe of left lung
5
SK-N-SH
5
astrocyte
5
breast epithelium
5
colon epithelial cell
5
coronary artery
5
endothelial cell of umbilical vein
5
epithelial cell of prostate
5
foreskin fibroblast
5
pancreas
5
skeletal muscle myoblast
5
skin fibroblast
4
22Rv1
4
Brodmann (1909) area 46
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
angular gyrus
4
aorta
4
ascending aorta
4
bronchial epithelial cell
4
cerebellum
4
cingulate gyrus
4
colonic mucosa
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
duodenal mucosa
4
endodermal cell
4
esophagus
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast
4
fibroblast of breast
4
frontal cortex
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
mucosa of rectum
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
neutrophil
4
omental fat pad
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right renal cortex interstitium
4
right renal pelvis
4
skeletal muscle satellite cell
4
stomach smooth muscle
4
substantia nigra
4
temporal lobe
4
thoracic aorta
4
tibial artery
4
tongue
4
trophoblast
4
urinary bladder
4
vagina
3
A673
3
CD8-positive, alpha-beta T cell
3
GM12878
3
H1-hESC
3
H7-hESC
3
H9
3
HAP-1
3
HT-29
3
HepG2
3
IMR-90
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
OCI-LY7
3
PC-9
3
Panc1
3
bipolar neuron
3
cardiac muscle cell
3
iPS DF 19.11
3
mesendoderm
3
neural cell
3
osteoblast
3
pancreatic A cell
3
type B pancreatic cell
3
uterus
2
8988T
2
A172
2
ACC112
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
AG20443
2
Ammon's horn
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
COLO829
2
CWRU1
2
Caco-2 cell
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
Organ
3
embryo
Life stage
2
embryonic
Date released
2
September, 2022
1
May, 2021
Software used
3
chromhmm
3
macs
2
r
1
abc
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR748AAQ
released
Annotation file set
: Target gene predictions for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR922GBW
released
Annotation file set
: enhancer-gene predicton of H1-hESC-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP