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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
74
kidney
41
right kidney
40
renal cortex interstitium
40
renal pelvis
36
left kidney
34
endothelial cell
25
hepatocyte
22
foreskin keratinocyte
21
keratinocyte
20
pigmented layer of retina
19
endothelial cell of umbilical vein
16
mammary gland epithelial cell
16
pancreatic ductal cell
16
retinal pigment epithelial cell
12
bronchial epithelial cell
12
endothelial cell of hepatic sinusoid
12
epithelial cell of prostate
12
left renal pelvis
12
pancreatic acinar cell
12
pancreatic beta cell
12
right renal pelvis
11
breast epithelium
11
esophagus squamous epithelium
11
left renal cortex interstitium
11
pancreatic alpha cell
10
EndoC_BH1
10
choroid plexus epithelial cell
10
dermis blood vessel endothelial cell
10
mammary epithelial cell
10
pancreatic delta cell
10
right renal cortex interstitium
9
HEK293
9
colon epithelial cell
9
kidney tubule cell
8
dermis lymphatic vessel endothelial cell
8
glomerular visceral epithelial cell
8
myoepithelial cell of mammary gland
7
endothelial cell of lymphatic vessel
7
epithelial cell of proximal tubule
7
luminal epithelial cell of mammary gland
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
7
type II pneumocyte
6
cortical cell of adrenal gland
6
enterocyte
6
epithelial cell of esophagus
6
glomerular endothelial cell
6
kidney epithelial cell
6
kidney glomerular epithelial cell
5
ACHN
5
Caki2
5
RCC 7860
5
brain microvascular endothelial cell
5
endocardial cell
5
iris pigment epithelial cell
5
lung microvascular endothelial cell
5
non-pigmented ciliary epithelial cell
5
renal cell carcinoma
5
tracheal epithelial cell
4
G401
4
aortic endothelial cell
4
dermis microvascular lymphatic vessel endothelial cell
4
kidney capillary endothelial cell
4
mesothelial cell
4
pancreatic A cell
4
pancreatic polypeptide-secreting cell
4
type B pancreatic cell
4
type I pneumocyte
3
HEK293T
3
club cell
3
cortex of kidney
3
epidermal melanocyte
3
epithelial cell of amnion
3
goblet cell
3
parietal cell
3
peptic cell
3
thyroid follicular cell
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cholangiocyte
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
foveolar cell of stomach
2
granular cell of epidermis
2
kidney epithelium
2
meso-epithelial cell
2
myoepithelial cell
2
non keratinizing barrier epithelial cell
2
paneth cell
2
respiratory goblet cell
2
small intestine goblet cell
2
stomach neuroendocrine cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
vein endothelial cell
1
brain microvascular endothelial cell
1
left kidney
1
retinal pigment epithelial cell
1
Liver fetal (hepatocyte)
1
RCC
1
amniotic epithelial cell
1
bronchial goblet cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
corneal epithelium
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
gastric goblet cell
1
glomerular epithelium
1
granulosa cell
1
intestinal epithelial cell
1
intestinal epithelium
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
metanephros
1
nephron tubule
1
neuroendocrine cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
parietal epithelial cell
1
placental villus capillary endothelial cell
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
renal principal cell
1
ureteric bud
1
urothelial cell
Disease term
3
renal cell adenocarcinoma
Organ
5
kidney
0
epithelium
Life stage
4
adult
Date released
3
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR341ZDO
released
Annotation file set
: Candidate regulatory elements for BSS01474 RCC 7860 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR193HPP
released
Annotation file set
: Target gene predictions for BSS01474 RCC 7860 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR656AIC
released
Annotation file set
: Chromatin states for BSS01474 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722TFK
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE RCC 7860
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR199VQC
released
Annotation file set
: Accessible chromatin annotation for Kidney RCC 7860 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP