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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
gene expression
Annotation Category
2
Target gene links
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
snRNA-seq
Available data
4
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
primary cell
Biosample term
38
heart
38
stomach
36
A549
32
brain
32
lung
32
muscle of arm
30
small intestine
28
adrenal gland
28
kidney
28
placenta
26
common myeloid progenitor, CD34-positive
26
large intestine
26
left lung
26
muscle of back
26
muscle of leg
22
right lung
22
thymus
20
hematopoietic multipotent progenitor cell
20
right kidney
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
renal cortex interstitium
18
renal pelvis
16
B cell
15
liver
14
CD8-positive, alpha-beta memory T cell
14
spinal cord
12
K562
12
adipose tissue
12
mononuclear cell
12
spleen
10
MCF-7
10
heart left ventricle
10
sigmoid colon
10
trophoblast cell
8
CD14-positive monocyte
8
T cell
8
body of pancreas
8
chorionic villus
8
endocrine pancreas
8
foreskin keratinocyte
8
gastrocnemius medialis
8
muscle of trunk
8
neural progenitor cell
8
ovary
8
psoas muscle
8
thyroid gland
8
transverse colon
6
HeLa-S3
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
caudate nucleus
6
chorion membrane
6
endometrium adenocarcinoma
6
fibroblast of cardiac tissue
6
fibroblast of dermis
6
fibroblast of lung
6
heart right ventricle
6
immortal human breast epithelial cell line cell
6
layer of hippocampus
6
mammary gland epithelial cell
6
naive T cell
6
natural killer cell
6
neurosphere
6
regulatory T cell
6
retina
6
skeletal muscle tissue
6
testis
6
tibial nerve
6
upper lobe of left lung
5
adipocyte
5
mesenchymal stem cell
4
22Rv1
4
Brodmann (1909) area 46
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
SK-N-SH
4
T47D
4
angular gyrus
4
aorta
4
ascending aorta
4
breast epithelium
4
bronchial epithelial cell
4
cerebellum
4
cingulate gyrus
4
colonic mucosa
4
coronary artery
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
duodenal mucosa
4
endodermal cell
4
endothelial cell of umbilical vein
4
epithelial cell of prostate
4
esophagus
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast of breast
4
foreskin fibroblast
4
frontal cortex
4
hepatocyte
4
keratinocyte
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
mucosa of rectum
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
neutrophil
4
omental fat pad
4
pancreas
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right renal cortex interstitium
4
right renal pelvis
4
skeletal muscle myoblast
4
skin fibroblast
4
stomach smooth muscle
4
substantia nigra
4
temporal lobe
4
thoracic aorta
4
tibial artery
4
tongue
4
trophoblast
4
urinary bladder
4
vagina
3
neural cell
3
skeletal muscle satellite cell
3
smooth muscle cell
2
8988T
2
A172
2
A673
2
ACC112
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
AG20443
2
Ammon's horn
2
BE(2)-C
2
BJ cell
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO829
2
CWRU1
2
Caco-2 cell
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
ES-I3
2
G401
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM08714
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12875
2
GM12878
2
GM12891
2
GM12892
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
GM23248
2
GM23338
2
H1-hESC
2
H4
2
H54
2
H7-hESC
2
H9
2
HAP-1
2
HCT116
2
HEK293
2
HEK293T
2
HK-2 cell
2
HL-60
2
HPDE6-E6E7
Organ
5
connective tissue
Life stage
2
adult
2
unknown
Date released
4
September, 2022
1
February, 2024
Software used
8
macs
6
chromhmm
5
r
4
abc
2
encode-ccres
1
deeptools
1
deltasvm
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
4
AMP
1
AMP2
files.file_type!
bigBed bed9
Showing 5 of 5 results
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619LYX
released
Annotation file set
: Target gene predictions for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP