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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
108
monocyte
54
common myeloid progenitor, CD34-positive
44
CD8-positive, alpha-beta T cell
38
B cell
33
endothelial cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
30
fibroblast
24
pericyte cell
22
CD8-positive, alpha-beta memory T cell
22
smooth muscle cell
20
T cell
20
hepatocyte
20
macrophage
20
mononuclear cell
20
natural killer cell
19
foreskin keratinocyte
18
endothelial cell of umbilical vein
18
trophoblast cell
17
keratinocyte
17
regulatory T cell
16
astrocyte
16
fibroblast of lung
16
foreskin fibroblast
15
osteoblast
13
CD4-positive, alpha-beta T cell
13
T-helper 1 cell
13
mammary epithelial cell
13
mammary gland epithelial cell
13
neurosphere
13
neutrophil
13
pancreatic ductal cell
13
skeletal muscle myoblast
12
bronchial epithelial cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
pancreatic beta cell
12
skeletal muscle satellite cell
11
T-helper 17 cell
11
T-helper 2 cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pancreatic alpha cell
10
dermis blood vessel endothelial cell
10
erythroblast
10
pancreatic acinar cell
10
pancreatic delta cell
10
retinal pigment epithelial cell
9
epithelial cell of prostate
9
kidney tubule cell
9
mature neutrophil
9
naive T cell
9
skeletal muscle fiber
9
skin fibroblast
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
hepatic stellate cell
mast cell
8
myoepithelial cell of mammary gland
7
CD1c-positive myeloid dendritic cell
7
endothelial cell of lymphatic vessel
7
luminal epithelial cell of mammary gland
7
mesenchymal stem cell
7
pulmonary artery endothelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
T-cell
6
adipocyte
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
epithelial cell of proximal tubule
6
foreskin melanocyte
6
glomerular visceral epithelial cell
6
kidney glomerular epithelial cell
6
myofibroblast cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
renal cortical epithelial cell
5
CD14-positive, CD16-negative classical monocyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
brain microvascular endothelial cell
5
endocardial cell
5
fibroblast of peridontal ligament
5
gabaergic neuron
5
glomerular endothelial cell
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney epithelial cell
5
lung microvascular endothelial cell
5
non-pigmented ciliary epithelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
alternatively activated macrophage
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the aortic adventitia
4
fibroblast of the conjunctiva
4
kidney capillary endothelial cell
4
memory B cell
4
mesothelial cell
4
neuronal stem cell
4
pancreatic polypeptide-secreting cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
4
type I pneumocyte
3
cardiac fibroblast
3
CD4-positive helper T cell
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
bone marrow cell
3
ciliated cell
3
club cell
3
enteric neuron
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
glial cell
3
goblet cell
3
inflammatory macrophage
3
leukocyte
3
mammary stem cell
3
megakaryocyte
3
mononuclear cell of bone marrow
3
myotube
3
naive t cell
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic stellate cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
schwann cell
3
thyroid follicular cell
3
type B pancreatic cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
Th2 cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
alveolar macrophage
2
basal cell of epidermis
2
brain pericyte
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
cholangiocyte
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
erythrocyte
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
granular cell of epidermis
2
head and neck squamous cell carcinoma
2
intestinal tuft cell
2
leukemic stem cell
2
luteal cell
2
mantle cell lymphoma cell
2
mature NK T cell
Organ
5
brain
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
1
January, 2020
May, 2020
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
mast cell
month_released!
May, 2020
Showing 5 of 5 results
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Download
FileSet
DSR679IUJ
released
Annotation file set
: Candidate regulatory elements for BSS00090 astrocyte of the cerebellum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR228YYU
released
Annotation file set
: Target gene predictions for BSS00090 astrocyte of the cerebellum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR718VYK
released
Annotation file set
: Chromatin states for BSS00090 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR967JTX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte of the cerebellum
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR656EMP
released
Annotation file set
: Accessible chromatin annotation of brain cerebellum astrocyte from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP