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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
2
accessible chromatin
Annotation Category
5
cis-regulatory elements
Annotation type Category
4
snATAC-seq
1
ATAC-seq
Available data
5
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
88
monocyte
57
A549
40
common myeloid progenitor, CD34-positive
35
hematopoietic multipotent progenitor cell
26
B cell
24
adrenal gland
23
liver
21
adipose tissue
21
retina
21
stomach
20
body of pancreas
20
pigmented layer of retina
19
K562
19
MCF-7
19
spleen
19
tibial nerve
18
CD8-positive, alpha-beta T cell
16
caudate nucleus
16
gastrocnemius medialis
16
sigmoid colon
16
thyroid gland
16
transverse colon
15
CD8-positive, alpha-beta memory T cell
15
mononuclear cell
15
natural killer cell
15
omental fat pad
14
ascending aorta
14
heart left ventricle
14
pancreas
13
Peyer's patch
13
coronary artery
13
substantia nigra
13
tibial artery
13
upper lobe of left lung
12
CD14-positive monocyte
12
cerebellum
12
endocrine pancreas
12
islet of Langerhans
12
layer of hippocampus
12
ovary
12
psoas muscle
12
right atrium auricular region
11
HeLa-S3
11
aorta
11
frontal cortex
11
temporal lobe
10
T cell
10
angular gyrus
10
endothelial cell of hepatic sinusoid
10
esophagus squamous epithelium
10
lower leg skin
10
subcutaneous adipose tissue
9
Ammon's horn
9
CD4-positive, alpha-beta memory T cell
9
breast epithelium
9
endometrium adenocarcinoma
9
esophagus muscularis mucosa
9
immortal human breast epithelial cell line cell
9
kidney
9
parathyroid adenoma
9
putamen
9
skeletal muscle tissue
9
thoracic aorta
8
CD4-positive, alpha-beta T cell
8
T-helper 1 cell
8
cingulate gyrus
8
colonic mucosa
8
duodenal mucosa
8
esophagus
8
fibroblast of breast
8
kidney tubule cell
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
prostate gland
8
right lobe of liver
8
small intestine
8
stomach smooth muscle
8
testis
8
vagina
7
LNCaP clone FGC
7
T-helper 2 cell
7
T47D
7
gastroesophageal sphincter
7
regulatory T cell
6
Brodmann (1909) area 46
6
adipocyte
6
hepatocyte
6
mammary gland epithelial cell
6
muscle cell
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
right cardiac atrium
5
GM12878
5
cerebellar cortex
5
dermis blood vessel endothelial cell
5
endothelial cell
5
fibroblast
5
fibroblast of lung
5
globus pallidus
5
heart right ventricle
5
hepatic stellate cell
5
kidney glomerular epithelial cell
5
lung
5
mature neutrophil
5
mesenchymal stem cell
5
middle frontal gyrus
5
neutrophil
5
skeletal muscle satellite cell
5
subcutaneous abdominal adipose tissue
5
uterus
4
A172
4
ACC112
4
ACHN
4
C1 segment of cervical spinal cord
4
C4-2B
4
Caki2
4
DOHH2
4
GM04503
4
GM04504
4
GM23248
4
GM23338
4
H4
4
H54
4
HAP-1
4
HCT116
4
HL-60
4
HS-27A
4
HS-5
4
HT-29
4
HT1080
4
KBM-7
4
KMS-11
4
LHCN-M2
4
Loucy
4
M059J
4
MM.1S
4
NB4
4
NCI-H929
4
OCI-LY1
4
OCI-LY3
4
OCI-LY7
4
PC-3
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
RWPE2
4
SJSA1
4
SK-MEL-5
4
SU-DHL-6
4
SW480
4
amygdala
4
anterior cingulate cortex
4
bipolar neuron
4
cartilage tissue
4
cerebellum (Hemisphere)
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
fibroblast of dermis
4
gastrocnemius medialis(Muscle - Skeletal)
4
glutamatergic neuron
4
heart
4
hypothalamus
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
left ventricle myocardium
4
macrophage
4
medulla oblongata
4
midbrain
4
mucosa of stomach
4
nucleus accumbens
4
occipital lobe
4
pancreatic alpha cell
4
pancreatic beta cell
4
peripheral blood mononuclear cell
4
pons
4
skeletal muscle myoblast
4
superior temporal gyrus
4
urinary bladder
3
8988T
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
COLO829
3
Caco-2 cell
3
GM10248
3
GM10266
3
GM12875
3
GM19238
3
GM19239
3
GM19240
3
HPDE6-E6E7
3
HuH-7
Disease term
2
heart failure
1
liver disease
Organ
5
epithelium
Life stage
8
embryonic
5
adult
1
unknown
Date released
3
May, 2024
1
August, 2021
1
May, 2022
Software used
2
macs
Lab
3
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Project
5
AMP
RFA
5
AMP2
Showing 5 of 5 results
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Download
FileSet
DSR525HAC
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of endothelial cell derived from liver snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR500MUW
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of endothelial cell derived from RV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR323SPU
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of endothelial cell derived from LV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP