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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
67
heart
62
stomach
56
kidney
53
brain
50
muscle of arm
49
lung
48
small intestine
46
adrenal gland
44
muscle of leg
44
placenta
41
large intestine
39
left lung
39
muscle of back
37
thymus
36
liver
34
right lung
33
retina
31
right kidney
30
renal pelvis
29
renal cortex interstitium
27
left kidney
26
adipose tissue
25
heart left ventricle
23
spinal cord
22
spleen
21
islet of Langerhans
20
pigmented layer of retina
19
tibial nerve
18
body of pancreas
18
sigmoid colon
17
coronary artery
17
psoas muscle
16
caudate nucleus
16
pancreas
16
tibial artery
15
heart right ventricle
15
ovary
15
right atrium auricular region
14
gastrocnemius medialis
14
thyroid gland
14
transverse colon
13
ascending aorta
13
frontal cortex
13
muscle of trunk
12
chorionic villus
12
endocrine pancreas
12
omental fat pad
11
cerebellum
11
substantia nigra
10
Ammon's horn
10
Peyer's patch
10
aorta
10
chorion membrane
10
layer of hippocampus
10
left cardiac atrium
10
skeletal muscle tissue
10
subcutaneous adipose tissue
10
testis
10
upper lobe of left lung
9
putamen
9
temporal lobe
9
thoracic aorta
8
angular gyrus
8
breast epithelium
8
left renal pelvis
8
right renal pelvis
8
trophoblast
7
cingulate gyrus
7
colonic mucosa
7
duodenal mucosa
7
esophagus
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
eye
7
left renal cortex interstitium
7
limb
7
mucosa of rectum
7
prostate gland
7
right lobe of liver
7
right renal cortex interstitium
7
stomach smooth muscle
7
tongue
7
urinary bladder
6
Brodmann (1909) area 46
6
lower leg skin
6
muscle layer of colon
6
muscle layer of duodenum
6
occipital lobe
6
parathyroid adenoma
6
right cardiac atrium
6
vagina
5
cerebellum (Hemisphere)
5
globus pallidus
5
medulla oblongata
5
midbrain
5
pons
5
superior temporal gyrus
5
uterus
4
C1 segment of cervical spinal cord
4
amygdala
4
anterior cingulate cortex
4
cartilage tissue
4
cerebellar cortex
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
embryonic facial prominence
4
gastrocnemius medialis(Muscle - Skeletal)
4
germinal matrix
4
hypothalamus
4
inferior parietal cortex
4
left ventricle myocardium
4
middle frontal gyrus
4
nucleus accumbens
4
rectum smooth muscle tissue
4
umbilical cord
3
amnion
3
arm bone
3
femur
3
gastroesophageal sphincter
3
germinal center
3
leg bone
3
mucosa of stomach
3
skin of body
2
hindlimb muscle
2
muscle of leg
2
blood
2
pancreatic ductal cell
2
pancreatic stellate cell
2
tissue
1
left kidney
1
omental fat pad
1
Schwann cell
1
beige adipocyte
1
bladder (urinary bladder)
1
cardiac ventricle
1
cerebrospinal fluid
1
cortex of kidney
1
crypt of Lieberkuhn
1
dorsolateral prefrontal cortex
1
endothelial cell
1
fetal heart
1
forelimb muscle
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
mid-frontal lobe
1
nephron tubule
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
prefrontal cortex
1
renal cortex tubule
1
renal glomerulus
1
skeletal muscle
1
subcutaneous abdominal adipose tissue
1
synovial joint
1
tissue-resident macrophage
1
type B pancreatic cell
1
white adipose tissue
Organ
3
musculature of body
3
stomach
Life stage
3
adult
Date released
February, 2021
3
September, 2022
Software used
2
r
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
February, 2021
Showing 3 of 3 results
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Download
FileSet
DSR779VQV
released
Annotation file set
: Candidate regulatory elements for BSS00381 gastroesophageal sphincter from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR813EZW
released
Annotation file set
: Target gene predictions for BSS00381 gastroesophageal sphincter from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR608ANH
released
Annotation file set
: Chromatin states for BSS00381 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP