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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
2
target gene predictions
1
eQTL
1
gene expression
Annotation Category
4
cis-regulatory elements
2
Target gene links
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
4
snATAC-seq
2
ATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
7
bed bed3+
3
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
4
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
111
monocyte
54
common myeloid progenitor, CD34-positive
47
CD8-positive, alpha-beta T cell
41
B cell
32
CD4-positive, alpha-beta memory T cell
32
endothelial cell
31
CD14-positive monocyte
29
fibroblast
24
pericyte cell
22
CD8-positive, alpha-beta memory T cell
21
hepatocyte
21
macrophage
21
natural killer cell
21
smooth muscle cell
20
T cell
20
mononuclear cell
19
foreskin keratinocyte
19
regulatory T cell
18
endothelial cell of umbilical vein
18
trophoblast cell
17
keratinocyte
16
astrocyte
15
CD4-positive, alpha-beta T cell
15
T-helper 1 cell
14
fibroblast of lung
14
foreskin fibroblast
14
neutrophil
14
osteoblast
13
T-helper 17 cell
13
T-helper 2 cell
13
mammary gland epithelial cell
13
neurosphere
13
pancreatic ductal cell
13
skeletal muscle myoblast
12
bronchial epithelial cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
fibroblast of cardiac tissue
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
pancreatic beta cell
12
skeletal muscle satellite cell
11
fibroblast of dermis
11
pancreatic alpha cell
10
dermis blood vessel endothelial cell
10
pancreatic acinar cell
10
pancreatic delta cell
9
epithelial cell of prostate
9
erythroblast
9
kidney tubule cell
9
mature neutrophil
9
naive T cell
9
retinal pigment epithelial cell
9
skeletal muscle fiber
9
skin fibroblast
8
fibroblast of breast
8
glutamatergic neuron
8
hepatic stellate cell
8
mast cell
8
myoepithelial cell of mammary gland
7
CD1c-positive myeloid dendritic cell
7
endothelial cell of lymphatic vessel
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
luminal epithelial cell of mammary gland
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
7
type II pneumocyte
6
T-cell
6
adipocyte
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
epithelial cell of proximal tubule
6
foreskin melanocyte
6
glomerular endothelial cell
6
glomerular visceral epithelial cell
6
kidney epithelial cell
6
kidney glomerular epithelial cell
6
memory B cell
6
mesenchymal stem cell
6
myofibroblast cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
5
basal cell
5
brain microvascular endothelial cell
5
endocardial cell
5
fibroblast of peridontal ligament
5
gabaergic neuron
5
inhibitory neuron
5
iris pigment epithelial cell
5
lung microvascular endothelial cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
non-pigmented ciliary epithelial cell
5
plasma cell
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the aortic adventitia
4
fibroblast of the conjunctiva
4
inflammatory macrophage
4
kidney capillary endothelial cell
4
megakaryocyte
4
mesothelial cell
4
neuronal stem cell
4
pancreatic polypeptide-secreting cell
4
preadipocyte
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
4
type I pneumocyte
3
CD4-positive helper T cell
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
activated CD4-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
aortic adventitial fibroblast
3
bone marrow cell
3
brain pericyte
3
cardiac fibroblast
3
ciliated cell
3
club cell
3
enteric neuron
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
glial cell
3
goblet cell
3
leukocyte
3
mammary stem cell
3
mononuclear cell of bone marrow
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic stellate cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
renal epithelial cell
3
schwann cell
3
thyroid follicular cell
3
type B pancreatic cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
T follicular helper cell
2
Th2 cell
2
activated CD8-positive, alpha-beta T cell
2
alveolar macrophage
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
cholangiocyte
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
erythrocyte
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
gamma-delta T cell
Organ
6
musculature of body
Life stage
1
unknown
Date released
4
November, 2021
3
February, 2024
1
May, 2022
October, 2022
Software used
4
macs
2
abc
1
deeptools
1
qTLtools
1
r
1
samtools
1
umitools
Lab
4
Bing Ren, UCSD
3
Stephen Parker, UMich
1
AMP-T2D consortium
Project
4
AMP
4
ENCODE
RFA
4
ENCODE3
3
AMP2
1
AMP
month_released!
October, 2022
Showing 8 of 8 results
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Download
FileSet
DSR704QRW
released
Annotation file set
: Accessible chromatin from snATAC-seq of type I muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR232VYZ
released
Annotation file set
: Target gene predictions of Type I Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR107HEF
released
Annotation file set
: Target gene predictions of Natural Killer T Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR470SUP
released
Annotation file set
: Accessible chromatin annotation of Type I Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR074SNG
released
Annotation file set
: Accessible chromatin annotation of Natural Killer T Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR355IUU
released
Annotation file set
: Expression QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR209HNE
released
Annotation file set
: Cell type chromatin broad peaks and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR928HZI
released
Annotation file set
: Cell type gene expression mean TPM and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP