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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
3
snATAC-seq
1
pCHi-C
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
46
H1-hESC
23
trophoblast cell
16
H9
16
chorionic villus
16
testis
11
trophoblast
10
endodermal cell
8
mesodermal cell
7
MG63
6
H7-hESC
6
HUES6
6
HUES8
6
NT2-D1 cell
6
OCI-LY1
6
SJSA1
5
CyT49
5
H4
5
HUES64
5
L1-S8
5
OCI-LY3
5
ectodermal cell
4
ELF-1
4
HS-27A
4
HS-5
4
HUES48
4
KMS-11
4
L1-S8R
4
NCI-H929
4
U2OS
4
UCSF-4
4
embryonic facial prominence
4
femur
4
megakaryocyte
4
stromal cell of bone marrow
3
ES-I3
3
arm bone
3
cardiac mesoderm primordium
3
hESC H9
3
leg bone
3
mononuclear cell of bone marrow
3
primordial germ cell
2
first pancreatic bud
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
H1
1
H7
1
NT2/D1
1
bone cell
1
bone marrow cell
1
cardiogenic mesoderm
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
embryonic fibroblast
1
morula
1
placental hematopoietic stem cell
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
trophoblast giant cell
Organ
4
bone element
4
bone marrow
0
embryo
0
testis
Date released
2
January, 2021
1
May, 2020
1
November, 2021
Software used
2
macs
1
chicago
1
cicero
Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
T1D
1
AMP
1
ENCODE
RFA
2
T1D
1
AMP
1
ENCODE3
Showing 4 of 4 results
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Download
FileSet
DSR326TXQ
released
Annotation file set
: Accessible chromatin annotation of Fetal Megakaryocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR345BXM
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of megakaryocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR213MXZ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of megakaryocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR992TVD
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of megakaryocyte
Lab:
AMP-T2D consortium
Project:
AMP