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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
accessible chromatin
1
eQTL
1
meQTL
Annotation Category
3
Target gene links
2
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
3
ATAC-seq
1
DNA methylation profiling by array assay
1
DNase-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
1
snATAC-seq
Available data
6
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
6
primary cell
1
cell line
Biosample term
80
heart
80
stomach
66
lung
66
muscle of arm
64
HeLa-S3
64
brain
61
kidney
61
small intestine
59
A549
59
adrenal gland
56
muscle of leg
55
placenta
54
common myeloid progenitor, CD34-positive
54
large intestine
54
muscle of back
52
left lung
45
thymus
44
right lung
43
H1-hESC
41
right kidney
39
hematopoietic multipotent progenitor cell
39
renal cortex interstitium
38
K562
38
liver
38
renal pelvis
36
left kidney
35
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
30
spinal cord
28
heart left ventricle
28
spleen
25
adipose tissue
22
CD8-positive, alpha-beta memory T cell
22
body of pancreas
22
sigmoid colon
21
MCF-7
21
trophoblast cell
19
HFFc6
19
foreskin keratinocyte
19
mononuclear cell
19
psoas muscle
19
tibial nerve
18
adipocyte
18
islet of Langerhans
17
endothelial cell of umbilical vein
17
gastrocnemius medialis
17
heart right ventricle
17
muscle of trunk
17
ovary
16
H9
16
caudate nucleus
16
chorionic villus
16
fibroblast of lung
16
thyroid gland
16
transverse colon
15
CD8-positive, alpha-beta T cell
15
T cell
15
coronary artery
15
endocrine pancreas
15
natural killer cell
14
CD4-positive, alpha-beta T cell
14
T-helper 1 cell
14
ascending aorta
14
foreskin fibroblast
14
mesenchymal stem cell
14
skeletal muscle tissue
14
smooth muscle cell
14
substantia nigra
14
tibial artery
13
GM12878
13
Peyer's patch
13
T-helper 17 cell
13
T-helper 2 cell
13
layer of hippocampus
13
neural progenitor cell
13
neurosphere
13
omental fat pad
13
pancreas
13
regulatory T cell
13
right atrium auricular region
aorta
12
cardiac muscle cell
12
endothelial cell
12
fibroblast of dermis
12
keratinocyte
12
neutrophil
12
retina
12
testis
12
upper lobe of left lung
11
cerebellum
11
fibroblast
11
frontal cortex
11
hepatocyte
11
left renal cortex interstitium
11
mammary gland epithelial cell
pericyte cell
11
subcutaneous adipose tissue
10
SK-N-SH
10
angular gyrus
10
breast epithelium
10
dermis blood vessel endothelial cell
10
esophagus squamous epithelium
10
fibroblast of cardiac tissue
10
left cardiac atrium
10
left renal pelvis
10
skeletal muscle myoblast
10
temporal lobe
9
Ammon's horn
9
chorion membrane
9
cingulate gyrus
9
colonic mucosa
9
duodenal mucosa
9
endometrium adenocarcinoma
9
epithelial cell of prostate
9
esophagus
9
esophagus muscularis mucosa
9
immortal human breast epithelial cell line cell
9
lower leg skin
9
lymphocyte
9
parathyroid adenoma
9
right renal cortex interstitium
9
right renal pelvis
9
thoracic aorta
8
22Rv1
8
HepG2
8
SK-N-DZ
8
bronchial epithelial cell
8
endodermal cell
8
eye
8
fibroblast of breast
8
macrophage
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
putamen
8
tongue
7
LNCaP clone FGC
7
T47D
7
WI38
7
astrocyte
7
gastroesophageal sphincter
7
kidney tubule cell
7
limb
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
right lobe of liver
7
skeletal muscle satellite cell
7
stomach smooth muscle
7
trophoblast
6
Brodmann (1909) area 46
6
HCT116
6
HEK293
6
IMR-90
6
NAMALWA cell
6
T-cell
6
choroid plexus epithelial cell
6
colon epithelial cell
6
dendritic cell
6
dermis lymphatic vessel endothelial cell
6
embryonic stem cell
6
epithelial cell of esophagus
6
epithelial cell of proximal tubule
6
erythroblast
6
foreskin melanocyte
6
mammary epithelial cell
6
mature neutrophil
6
monocyte
6
mucosa of rectum
6
muscle layer of duodenum
6
prostate gland
6
vagina
5
A673
5
CD14-positive, CD16-negative classical monocyte
5
GM06990
5
GM08714
5
GM12864
5
GM12865
5
GM12875
5
GM19238
5
GM19239
5
GM19240
5
HAP-1
5
HL-60
5
HT-29
5
KARPAS-422 cell
5
MM.1S
5
NB4
5
OCI-LY7
5
PC-9
5
Panc1
5
SK-N-MC
5
WERI-Rb-1
5
alternatively activated macrophage
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
bipolar neuron
5
cerebellum (Hemisphere)
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
Life stage
2
adult
Date released
3
May, 2020
3
May, 2021
1
January, 2021
Software used
macs
4
limix
1
abc
1
chicago
1
cicero
1
minfi
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
6
AMP
1
T1D
RFA
6
AMP
1
T1D
biosample_term_name!
aorta
pericyte cell
software_used.software.name!
macs
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR301CXZ
released
Annotation file set
: methylation quantitative trait loci (meQTLs) from DAN methylation of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 196 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR693IVW
released
Annotation file set
: expression quantitative trait loci (eQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR499JJX
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of monocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR157QFX
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal monocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR125CHQ
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated monocyte
Lab:
AMP-T2D consortium
Project:
AMP