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Schema
Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
87
heart
82
stomach
70
brain
67
muscle of arm
66
kidney
66
lung
63
HeLa-S3
61
A549
61
small intestine
58
adrenal gland
58
placenta
57
muscle of leg
55
large intestine
54
muscle of back
53
common myeloid progenitor, CD34-positive
52
left lung
47
thymus
45
H1-hESC
45
right lung
42
hematopoietic multipotent progenitor cell
41
B cell
41
right kidney
40
K562
40
renal cortex interstitium
40
renal pelvis
39
liver
38
retina
36
left kidney
33
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
heart left ventricle
30
endothelial cell
30
spleen
25
MCF-7
24
smooth muscle cell
22
CD8-positive, alpha-beta memory T cell
22
foreskin keratinocyte
22
sigmoid colon
22
tibial nerve
21
T cell
21
body of pancreas
21
macrophage
20
breast cancer cell
20
hepatocyte
20
keratinocyte
20
mononuclear cell
20
neural progenitor cell
20
pancreas
20
pigmented layer of retina
20
trophoblast cell
19
caudate nucleus
19
natural killer cell
19
psoas muscle
19
regulatory T cell
18
HFFc6
18
heart right ventricle
17
coronary artery
17
endothelial cell of umbilical vein
17
gastrocnemius medialis
17
ovary
17
tibial artery
16
CD14-positive monocyte
16
CD8-positive, alpha-beta T cell
16
cardiac muscle cell
16
chorionic villus
16
islet of Langerhans
16
muscle of trunk
16
retinal pigment epithelial cell
16
right atrium auricular region
16
thyroid gland
16
transverse colon
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
GM12878
15
H9
15
layer of hippocampus
15
mammary gland epithelial cell
15
substantia nigra
15
testis
14
HepG2
14
T-helper 1 cell
14
ascending aorta
14
astrocyte
14
endocrine pancreas
14
skeletal muscle tissue
13
Peyer's patch
13
T-helper 17 cell
13
T-helper 2 cell
13
bronchial epithelial cell
13
neurosphere
13
pancreatic ductal cell
13
skeletal muscle myoblast
12
aorta
12
cerebellum
12
excitatory neuron
12
neuroblastoma cell
12
pancreatic beta cell
12
prostate gland
12
skeletal muscle satellite cell
11
Ammon's horn
11
endothelial cell of hepatic sinusoid
11
frontal cortex
11
left renal cortex interstitium
11
left renal pelvis
11
mammary epithelial cell
11
putamen
11
right renal pelvis
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
breast epithelium
10
choroid plexus epithelial cell
10
epithelial cell of prostate
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
pancreatic acinar cell
10
pancreatic alpha cell
10
thoracic aorta
10
trophoblast
9
HEK293
9
SK-N-DZ
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
erythroblast
9
kidney tubule cell
9
liposarcoma
9
monocyte
9
neuronal stem cell
9
neutrophil
9
pancreatic delta cell
9
parathyroid adenoma
9
right renal cortex interstitium
9
tongue
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
esophagus
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
skeletal muscle fiber
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19239
7
GM19240
7
HT-29
7
IMR-90
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
foreskin melanocyte
7
mature neutrophil
7
mesendoderm
7
right lobe of liver
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
GM19238
6
HCT116
6
HUES8
6
SJSA1
6
SW480
6
WI38
6
fibroblast of breast
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
month_released!
August, 2021
May, 2021
organ_slims!
connective tissue
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP