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Schema
Citing CMDGA
Clear Filters
Annotation type
2
variant allelic effects
Annotation Category
2
Genetic variant effects
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
111
monocyte
54
common myeloid progenitor, CD34-positive
47
CD8-positive, alpha-beta T cell
41
B cell
33
endothelial cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
30
fibroblast
24
pericyte cell
22
CD8-positive, alpha-beta memory T cell
22
smooth muscle cell
21
hepatocyte
21
macrophage
21
natural killer cell
20
T cell
20
mononuclear cell
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
19
regulatory T cell
18
trophoblast cell
17
keratinocyte
16
astrocyte
16
fibroblast of lung
16
foreskin fibroblast
15
CD4-positive, alpha-beta T cell
15
T-helper 1 cell
15
osteoblast
14
neutrophil
14
skeletal muscle myoblast
13
T-helper 17 cell
13
T-helper 2 cell
13
mammary epithelial cell
13
mammary gland epithelial cell
13
neurosphere
13
pancreatic ductal cell
12
bronchial epithelial cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
pancreatic beta cell
12
skeletal muscle satellite cell
11
erythroblast
11
pancreatic alpha cell
10
dermis blood vessel endothelial cell
10
pancreatic acinar cell
10
pancreatic delta cell
10
retinal pigment epithelial cell
9
epithelial cell of prostate
9
kidney tubule cell
9
mature neutrophil
9
naive T cell
9
skeletal muscle fiber
9
skin fibroblast
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
hepatic stellate cell
8
mast cell
8
myoepithelial cell of mammary gland
7
CD1c-positive myeloid dendritic cell
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
endothelial cell of lymphatic vessel
7
epithelial cell of proximal tubule
7
luminal epithelial cell of mammary gland
7
mesenchymal stem cell
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
T-cell
6
adipocyte
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
glomerular endothelial cell
6
glomerular visceral epithelial cell
kidney epithelial cell
6
kidney glomerular epithelial cell
6
memory B cell
6
myofibroblast cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
5
basal cell
5
brain microvascular endothelial cell
5
endocardial cell
5
fibroblast of peridontal ligament
5
gabaergic neuron
5
inhibitory neuron
5
iris pigment epithelial cell
5
lung microvascular endothelial cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
non-pigmented ciliary epithelial cell
5
plasma cell
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the aortic adventitia
4
fibroblast of the conjunctiva
4
inflammatory macrophage
4
kidney capillary endothelial cell
4
megakaryocyte
4
mesothelial cell
4
neuronal stem cell
4
pancreatic polypeptide-secreting cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
4
type I pneumocyte
3
CD4-positive helper T cell
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
activated CD4-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
bone marrow cell
3
brain pericyte
3
ciliated cell
3
club cell
3
enteric neuron
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
glial cell
3
goblet cell
3
leukocyte
3
mammary stem cell
3
mononuclear cell of bone marrow
3
myotube
3
naive t cell
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic stellate cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
schwann cell
3
thyroid follicular cell
3
type B pancreatic cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
T follicular helper cell
2
Th2 cell
2
activated CD8-positive, alpha-beta T cell
2
alveolar macrophage
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
cholangiocyte
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
erythrocyte
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
Organ
2
vasculature
Date released
2
February, 2024
Software used
2
deltasvm
Lab
2
Bing Ren, UCSD
Project
2
AMP
RFA
2
AMP
biosample_term_name!
kidney epithelial cell
Showing 2 of 2 results
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Download
FileSet
DSR963XVP
released
Annotation file set
: Variant allelic effects annotation of Vascular smooth muscle cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR265TNH
released
Annotation file set
: Variant allelic effects annotation of Vascular smooth muscle cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP