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Citing CMDGA
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Annotation type
1
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ATAC-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
18
tissue
3
primary cell
Biosample term
3
thyroid follicular cell
Organ
491
epithelium
235
connective tissue
118
vasculature
100
skin of body
80
blood vessel
72
pancreas
61
kidney
49
musculature of body
46
mammary gland
penis
40
extraembryonic component
40
liver
35
brain
34
lung
26
heart
23
eye
23
intestine
22
embryo
21
artery
19
vein
16
bronchus
14
bone element
13
bone marrow
12
lymphatic vessel
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
mouth
4
small intestine
4
spinal cord
3
gonad
3
thyroid gland
2
ovary
1
limb
1
thymus
Date released
2
November, 2021
1
February, 2024
Software used
1
abc
1
deltasvm
1
macs
Lab
3
Bing Ren, UCSD
Project
2
ENCODE
1
AMP
RFA
2
ENCODE3
1
AMP
organ_slims!
penis
Showing 3 of 3 results
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Download
FileSet
DSR121IWB
released
Annotation file set
: Target gene predictions of Thyroid Follicular Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR356XOM
released
Annotation file set
: Accessible chromatin annotation of Thyroid Follicular Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR447YDG
released
Annotation file set
: Variant allelic effects annotation of Follicular cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP