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Schema
Citing CMDGA
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Annotation type
2
accessible chromatin
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
snATAC-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
1
placenta
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
Organ
240
epithelium
99
connective tissue
74
pancreas
36
musculature of body
32
intestine
28
liver
25
vasculature
brain
19
blood vessel
19
kidney
18
heart
18
lung
17
skin of body
14
large intestine
14
stomach
13
adrenal gland
10
mammary gland
10
pituitary gland
8
embryo
6
blood
6
bodily fluid
6
esophagus
6
extraembryonic component
6
small intestine
5
adipose tissue
4
bronchus
4
eye
4
lymphatic vessel
4
thyroid gland
4
uterus
3
bone element
3
bone marrow
3
gonad
3
limb
3
ovary
3
placenta
3
prostate gland
2
artery
2
thymus
2
vein
1
breast
1
lymph node
1
penis
1
spinal cord
1
spleen
Date released
2
November, 2021
1
May, 2021
Software used
2
macs
1
abc
Lab
AMP-T2D consortium
2
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
2
ENCODE
1
AMP
RFA
2
ENCODE3
1
AMP
lab.title!
AMP-T2D consortium
organ_slims!
brain
Showing 3 of 3 results
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Download
FileSet
DSR983RIG
released
Annotation file set
: Accessible chromatin annotation of Fetal Hematopoeitic Stem Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR100TUS
released
Annotation file set
: Accessible chromatin annotation of Fetal Placental Endothelial Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR831KJP
released
Annotation file set
: enhancer-gene predicton of placenta-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP