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Software
released
Peak alignment — source
Software for aligning peaks across multiple input files to generate a unified, non-overlapping peak set, with quality control and filtering based on cross-file peak reproducibility.
Software type: aligner
Publication
released
A limited set of transcriptional programs define major cell types
Alessandra Breschi, Manuel Muñoz-Aguirre, Valentin Wucher, et al.
Genome Res. 2020-07-29;30(7):1047-1059.
Publication
released
Identification of target genes and regulatory networks for bone mineral density GWAS loci through systematic targeting and inhibition
Mohammadjavad Kahlani, Larry Mesner, Vedavathi Madhu, et al.
bioRxiv. 2026-02-16;(Preprint)
FileSet
DSR756804
released
Annotation file set: Accessible chromatin sites for Thyroid thyroid follicular (TPO, TG, TSHR+)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR472640
released
Annotation file set: Accessible chromatin sites for Thyroid skeletal muscle (MYO18B, MYOM1, SOX6)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR748262
released
Annotation file set: Accessible chromatin sites for Thyroid fibroblast (COL1A1, COL1A2 positive but not contractile)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR896004
released
Annotation file set: Accessible chromatin sites for Thyroid stromal (unclear markers but still has NKAIN3, P3H2 expression)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR294681
released
Annotation file set: Accessible chromatin sites for Thyroid thyroid follicular (TPO, TG, TSHR+)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR527911
released
Annotation file set: Accessible chromatin sites for Thyroid thyroid follicular (TPO, TG, TSHR+)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR829752
released
Annotation file set: Accessible chromatin sites for Thymus medullary TEC (myoid) (PAX7+; high expression of TEC(myo) signature)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR118746
released
Annotation file set: Accessible chromatin sites for Thymus medullary TEC (myoid) (PAX7+; high expression of TEC(myo) signature)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR818942
released
Annotation file set: Accessible chromatin sites for Thymus endothelial cells (PECAM1+/MECOM+)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR879106
released
Annotation file set: Accessible chromatin sites for Thymus fibroblasts (COL1A2/COl3A1/DCN+)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR191253
released
Annotation file set: Accessible chromatin sites for Thymus medullary TEC (myoid Type IIa) (MYH2+)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR054201
released
Annotation file set: Accessible chromatin sites for Thymus medullary TEC (myoid Type IIa) (MYOG/MYPN/MYOT/MYH2+ (similar to TEC(myo) in Park et al); clusters with 14)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR571981
released
Annotation file set: Accessible chromatin sites for Thymus CD8+ CD4+ thymocytes (PTPRC+; cycling (G2/M and S-assigned); clusters with 0/1; low CD8+)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR632061
released
Annotation file set: Accessible chromatin sites for Thymus fibroblasts (FN1+/FLRT2+)
Lab: AMP-T2D consortium
Project: AMP
FileSet
DSR917464
released
Annotation file set: Accessible chromatin sites for Thymus B cells (PAX5+; high expression of Park et al B cell genes)
Lab: AMP-T2D consortium
Project: AMP

Data Type

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Showing 18 of 49685 results