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Schema
Citing CMDGA
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Assay category
2
DNA binding
1
3D chromatin structure
Assay
2
ChIP-seq
1
Hi-C
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Target of assay
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
Biosample type
2
primary cell
1
cell line
tissue
Organ
1
pancreas
Life stage
2
unknown
1
adult
Available data
3
bigWig
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
fastq
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
1
tagAlign
Platform
1
Illumina Genome Analyzer IIe
1
Illumina HiSeq 2000
Run type
2
single-ended
1
paired-ended
Read length (nt)
2
36
1
76
Library made from
3
DNA
Date released
2
August, 2017
1
October, 2019
Lab
3
AMP-T2D consortium
Replication type
3
isogenic
Audit category:
50
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
biosample_type!
tissue
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
Showing 3 of 3 results
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Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR410352
released
Audit warning
3
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR016105
released
Audit warning
1
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP