Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Assay category
3
DNA binding
1
3D chromatin structure
Assay
3
ChIP-seq
1
Hi-C
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
3
Homo sapiens
Target of assay
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Biosample type
2
primary cell
1
cell line
1
tissue
Organ
2
pancreas
Life stage
2
unknown
1
adult
Available data
4
bigWig
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
fastq
2
bed broadPeak
2
tagAlign
1
bed bed3+
1
bigBed broadPeak
1
hdf5
Platform
2
Illumina HiSeq 2000
1
Illumina Genome Analyzer IIe
Run type
3
single-ended
1
paired-ended
Read length (nt)
3
36
1
76
Library made from
3
DNA
Date released
3
August, 2017
1
October, 2019
Lab
4
AMP-T2D consortium
Replication type
3
isogenic
1
unreplicated
Audit category:
56
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
files.file_type!
bigBed bedMethyl
files.read_length!
150
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR410352
released
Audit warning
3
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR016105
released
Audit warning
1
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR676937
released
Audit warning
1
ChIP-seq
of pancreas
Target:
H3K36me3
Lab:
AMP-T2D consortium
Project:
AMP