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Citing CMDGA
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Embeddings type
2
Accessible chromatin
1
Gene expression
Embeddings Category
3
umap
Underlying Assay
1
10X scRNA-seq
1
10X snATAC-seq
1
sciATAC-seq
Available data
3
h5ad
1
mtx
1
tsv
File set status
3
released
Organism
1
Homo sapiens
Biosample type
2
primary cell
2
tissue
Biosample term
2
islet of Langerhans
lung
2
pancreas
2
peripheral blood mononuclear cell
1
tissues
Tissue term
2
blood
2
pancreas
1
tissues
Organ
2
blood
2
bodily fluid
2
pancreas
Date released
2
August, 2021
1
November, 2021
Lab
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
AMP
2
T1D
1
ENCODE
RFA
2
T1D
1
ENCODE3
award.project!
AMP
biosample_term_name!
lung
spleen
tissue_term_name!
epithelial cell
Showing 3 of 3 results
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FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D