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Schema
Citing CMDGA
Clear Filters
Embeddings type
3
Accessible chromatin
1
Gene expression
Embeddings Category
4
umap
Underlying Assay
2
10X snATAC-seq
1
10X scRNA-seq
10X snRNA-seq
1
sciATAC-seq
Available data
4
h5ad
1
mtx
1
tsv
File set status
4
released
Organism
2
Homo sapiens
Biosample type
3
tissue
2
primary cell
Biosample term
2
islet of Langerhans
2
pancreas
2
peripheral blood mononuclear cell
1
lung
1
tissues
Tissue term
2
blood
2
pancreas
1
lung
1
tissues
Organ
2
blood
2
bodily fluid
2
pancreas
1
lung
Date released
2
August, 2021
1
November, 2021
1
September, 2021
Lab
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
AMP
2
T1D
1
ENCODE
1
LungMap
RFA
2
T1D
1
ENCODE3
1
LungMap2
award.project!
AMP
biosample_term_name!
major salivary gland
trachea
embeddings_underlying_assay!
10X snRNA-seq
Showing 4 of 4 results
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FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D