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Annotation type
  • 2accessible chromatin
  • 2sQTL
  • 1target gene predictions
Annotation Category
  • 2Genetic variant effects
  • 2cis-regulatory elements
  • 1Target gene links
Annotation type Category
  • 3snATAC-seq
  • 2RNA-seq
Available data
  • 3bed bed3+
  • 2bigWig
  • 2csv
File set status
  • 5released
Genome assembly (visualization)
  • 3hg19
  • 1GRCh38
Organism
  • 5Homo sapiens
Biosample type
  • 5primary cell
Biosample term
  • 3megakaryocyte
  • 2articular chondrocyte
Organ
  • 311epithelium
  • 143kidney
  • 78connective tissue
  • 46vasculature
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  • 27blood vessel
  • 19intestine
  • 12heart
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  • 1thymus
Life stage
  • 2adult
Date released
  • 2January, 2021
  • 2January, 2025
  • 1November, 2021
Software used
  • 2macs
  • 2qTLtools
  • 1cicero
Lab
  • 2Doug Phanstiel, UNC
  • 2Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
Project
  • AMP
  • 2T1D
  • 2community
  • 1ENCODE
Collection Tags
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  • 1AMP
  • 1T2DKP
RFA
  • 2T1D
  • 2community
  • 1ENCODE3
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Showing 5 of 5 results

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  • FileSet

    DSR020DGY

    released

    Annotation file set: Splicing Quantitative Trait Loci (sQTL) from human primary articular chondrocytes under fibronectin fragment (FN-f) performed using RNA-seq data from 101 samples.
    Lab: Doug Phanstiel, UNC
    Project: community
  • FileSet

    DSR302PZQ

    released

    Annotation file set: Splicing Quantitative Trait Loci (sQTL) from human primary articular chondrocytes under hosphate buffer saline (PBS) resting performed using RNA-seq data from 101 samples.
    Lab: Doug Phanstiel, UNC
    Project: community
  • FileSet

    DSR326TXQ

    released

    Annotation file set: Accessible chromatin annotation of Fetal Megakaryocyte from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR345BXM

    released

    Annotation file set: coaccessible target genes annotation from snATAC-seq of megakaryocyte
    Lab: Kyle Gaulton, UCSD
    Project: T1D
  • FileSet

    DSR213MXZ

    released

    Annotation file set: accessible chromatin annotation from snATAC-seq of megakaryocyte
    Lab: Kyle Gaulton, UCSD
    Project: T1D
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