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Schema
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Annotation type
270
accessible chromatin
173
gene expression
139
target gene predictions
121
differential activity
5
eQTL
2
caQTL
2
pQTL
2
sQTL
1
variant allelic effects
Annotation Category
294
Gene expression levels
270
cis-regulatory elements
139
Target gene links
12
Genetic variant effects
Annotation type Category
297
snATAC-seq
281
single cell RNA-seq
114
ATAC-seq
16
RNA-seq
4
snRNA-seq
2
quantitative proteomics
1
SNP-SELEX
Available data
413
bed bed3+
283
tsv
269
bigWig
4
txt
2
csv
File set status
715
released
Genome assembly (visualization)
415
hg19
336
GRCh38
Organism
714
Homo sapiens
Biosample type
696
primary cell
9
cell line
9
tissue
Biosample term
19
pericyte cell
18
endothelial cell
18
fibroblast
13
macrophage
12
excitatory neuron
12
smooth muscle cell
9
astrocyte
7
induced pluripotent stem cell
6
colon epithelial cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
type II pneumocyte
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
cortical cell of adrenal gland
5
erythroblast
5
inhibitory neuron
5
pancreatic ductal cell
4
B cell
4
CD8-positive, alpha-beta T cell
4
articular chondrocyte
4
blood vessel smooth muscle cell
4
cartilage tissue
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
keratinocyte
4
luminal epithelial cell of mammary gland
4
memory B cell
4
skeletal muscle satellite cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
CD4-positive helper T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
basal cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
enterocyte
3
fibroblast of cardiac tissue
3
megakaryocyte
3
mesothelial cell
3
natural killer cell
3
oligodendrocyte precursor cell
3
schwann cell
3
skeletal muscle fiber
2
CD4-positive, alpha-beta T cell
2
EndoC_BH1
2
Muller cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
alveolar macrophage
2
basal cell of epidermis
2
blood vessel
2
capillary endothelial cell
2
cardiac endothelial cell
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
endothelial cell of hepatic sinusoid
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
granular cell of epidermis
2
heart
2
hepatocyte
2
intestinal tuft cell
2
luteal cell
2
mammary gland epithelial cell
2
mast cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
microglial cell
2
monocyte
2
myoepithelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
oligodendrocyte
2
pancreatic A cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
paneth cell
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
2
regulatory T cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
stellate neuron
2
stomach neuroendocrine cell
2
stromal cell
2
thyroid follicular cell
2
type B pancreatic cell
2
type I cell of adrenal cortex
2
type I muscle cell
2
type II cell of adrenal cortex
2
type II muscle cell
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
adipocyte
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
endothelial cell of artery
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
gastric goblet cell
1
glial cell
1
goblet cell
1
hepatic stellate cell
1
hepatoblast
1
islet of Langerhans
1
lung neuroendocrine cell
1
metanephros
1
myofibroblast cell
1
neuroendocrine cell
1
neuron
1
parietal epithelial cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
purified protein and synthetic DNA oligo binding assay
1
retinal bipolar neuron
1
retinal pigment epithelial cell
1
sympathetic neuron
Organ
311
epithelium
143
kidney
78
connective tissue
46
vasculature
40
pancreas
27
blood vessel
19
intestine
12
heart
12
lung
11
musculature of body
10
adrenal gland
10
skin of body
9
lymphatic vessel
9
stomach
6
large intestine
6
mammary gland
5
artery
5
bone element
5
liver
4
esophagus
4
eye
4
small intestine
3
bone marrow
3
bronchus
3
extraembryonic component
2
embryo
2
gonad
2
ovary
2
placenta
2
skeleton
2
thyroid gland
2
uterus
1
thymus
Life stage
290
adult
3
fetal
Date released
333
November, 2021
281
September, 2023
56
January, 2021
19
April, 2020
9
March, 2023
5
August, 2021
4
March, 2026
2
January, 2025
2
May, 2024
2
October, 2022
1
February, 2023
1
February, 2024
Software used
250
macs
171
r
111
abc
110
deseq2
32
cicero
5
fastqtl
5
peer
4
qTLtools
2
matrix-eQTL
1
bedops
1
betacells_cytokines_t1d
1
pepatac
Lab
333
Bing Ren, UCSD
281
KPMP
57
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
9
Anna Gloyn, Oxford
5
ITG
4
Doug Phanstiel, UNC
4
Joseph Wu, Stanford
3
Stephen S. Rich Lab @UVA
Project
AMP
333
ENCODE
281
KPMP
60
T1D
19
LungMap
17
community
5
ITG
Collection Tags
339
AMP
338
T2DKP
281
KPMP
59
T1D
28
T2DKP
9
CMDGA
1
DGA
RFA
333
ENCODE3
281
KPMP
60
T1D
19
LungMap2
17
community
5
ITG
award.project!
AMP
type!!!!
Biosample
Showing 8 of 715 results
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Download
FileSet
DSR116544
released
Annotation file set
: List of genes expression levels among human samples from Joseph Wu Lab at Stanford. Single Cell Multiomics and Deep Learning of Human Cardiac and Peripheral Artery Tissues
Lab:
Joseph Wu, Stanford
Project:
community
FileSet
DSR674361
released
Annotation file set
: List of genes differentially expressed among human samples from Joseph Wu Lab at Stanford. Single Cell Multiomics and Deep Learning of Human Cardiac and Peripheral Artery Tissues
Lab:
Joseph Wu, Stanford
Project:
community
FileSet
DSR254454
released
Annotation file set
: List of genes differentially expressed among human samples from Joseph Wu Lab at Stanford. Single Cell Multiomics and Deep Learning of Human Cardiac and Peripheral Artery Tissues
Lab:
Joseph Wu, Stanford
Project:
community
FileSet
DSR388ACT
released
Annotation file set
: Differential activity annotation of Transitional Principal-Intercalated Cell between CKD and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR865QJP
released
Annotation file set
: Differential activity annotation of Renin-positive Juxtaglomerular Granular Cell between CKD and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR365FCQ
released
Annotation file set
: Differential activity annotation of Proximal Tubule Epithelial Cell Segment 3 between CKD and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR605AGH
released
Annotation file set
: Differential activity annotation of Plasmacytoid Dendritic Cell between CKD and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR543EHM
released
Annotation file set
: Differential activity annotation of Natural Killer T Cell Type 2 between CKD and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP