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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
1
gene expression
Annotation Category
3
Target gene links
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
2
snATAC-seq
1
scRNA-seq
Available data
4
bed bed3+
1
bigWig
1
tsv
1
txt
File set status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
21
endothelial cell
16
adipocyte
15
CD14-positive monocyte
15
kidney
15
macrophage
14
endothelial cell of hepatic sinusoid
14
fibroblast
14
hepatocyte
11
natural killer cell
11
pancreatic alpha cell
11
pancreatic beta cell
11
pancreatic delta cell
11
pancreatic ductal cell
10
pancreatic acinar cell
10
pituitary stalk
10
smooth muscle cell
9
B cell
9
pancreatic stellate cell
8
dendritic cell
8
endothelial cell of lymphatic vessel
8
induced pluripotent stem cell
7
mast cell
6
neuronal stem cell
6
skeletal muscle fiber
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD4-positive helper T cell
5
CD8-positive, alpha-beta T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
endocardial cell
5
left cardiac atrium
5
mesenchymal stem cell
5
myofibroblast cell
5
pancreatic endothelial cell
4
T cell
4
cartilage tissue
4
erythrocyte
4
liver
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
pericyte cell
4
regular ventricular cardiac myocyte
4
type I muscle cell
4
type II muscle cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
Schwann cell
3
basal cell
3
enterocyte
3
islet of Langerhans
3
keratinocyte
3
monocyte
3
pancreatic quiescent stellate cell
3
subcutaneous adipose tissue
2
BJAB cell
2
ESC derived cell line
2
EndoC_BH1
2
GM12878
2
H1-hESC
2
HepG2
2
Jurkat
2
K562
2
MCF 10A cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
articular chondrocyte
2
capillary endothelial cell
2
cardiac muscle cell
2
cholangiocyte
2
conventional dendritic cell
2
endothelial cell of umbilical vein
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fibroblast of lung
2
glial cell
2
goblet cell
2
hepatic stellate cell
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
mammary epithelial cell
2
megakaryocyte
2
memory B cell
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neural cell
2
non-classical monocyte
2
pancreatic A cell
2
plasmacytoid dendritic cell
2
regulatory T cell
2
renal principal cell
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
stellate neuron
2
stomach
2
trophoblast cell
2
type B pancreatic cell
2
type II pneumocyte
2
vascular associated smooth muscle cell
1
A549
1
A673
1
B cell, CD19-positive
1
B-1 B cell
1
B-2 B cell
1
CD34-PB
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
SK-N-SH
1
Satellite Cells, Skeletal Muscle
1
T-helper 17 cell
1
adipose tissue
1
alternatively activated macrophage
1
astrocyte
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
Life stage
1
adult
Date released
2
January, 2021
2
May, 2021
1
August, 2021
Software used
2
abc
1
cicero
1
macs
1
r
1
seurat
Lab
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
2
Kyle Gaulton, UCSD
1
Katalin Susztak, Upenn
Project
3
AMP
ENCODE
2
T1D
RFA
2
AMP
2
T1D
1
AMP2
award.project!
ENCODE
biosample_term_name!
kidney tubule cell
prostate gland
lab.title!
AMP-T2D consortium
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D