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Schema
Citing CMDGA
Clear Filters
Annotation type
3
gene expression
2
differential activity
1
target gene predictions
Annotation Category
5
Gene expression levels
1
Target gene links
Annotation type Category
5
single cell RNA-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
5
tsv
1
bed bed3+
File set status
6
released
Genome assembly (visualization)
1
hg19
Organism
6
Homo sapiens
Biosample type
6
primary cell
1
tissue
Biosample term
127
monocyte
54
common myeloid progenitor, CD34-positive
48
CD8-positive, alpha-beta T cell
40
B cell
32
CD4-positive, alpha-beta memory T cell
32
hepatocyte
31
CD14-positive monocyte
26
endothelial cell
26
regulatory T cell
23
epithelial cell of proximal tubule
23
natural killer cell
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
21
glomerular endothelial cell
20
T-helper 17 cell
20
endothelial cell of umbilical vein
20
mononuclear cell
19
foreskin keratinocyte
18
trophoblast cell
17
osteoblast
16
T cell
16
T-helper 2 cell
16
fibroblast of lung
16
foreskin fibroblast
16
pancreatic beta cell
16
pancreatic ductal cell
16
skeletal muscle myoblast
15
pancreatic alpha cell
14
endothelial cell of hepatic sinusoid
14
macrophage
14
neutrophil
14
pancreatic delta cell
13
CD4-positive, alpha-beta T cell
13
keratinocyte
13
mammary epithelial cell
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
neurosphere
12
bronchial epithelial cell
12
fibroblast
12
fibroblast of dermis
12
pancreatic acinar cell
11
glomerular visceral epithelial cell
11
mammary gland epithelial cell
10
dermis blood vessel endothelial cell
10
kidney tubule cell
10
smooth muscle cell
9
epithelial cell of prostate
9
fibroblast of cardiac tissue
9
hepatic stellate cell
9
mature neutrophil
9
naive T cell
9
retinal pigment epithelial cell
9
skeletal muscle satellite cell
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
kidney glomerular epithelial cell
8
myoepithelial cell of mammary gland
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
pancreatic stellate cell
8
renal cortical epithelial cell
7
CD1c-positive myeloid dendritic cell
7
astrocyte
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mast cell
7
memory B cell
7
mesenchymal stem cell
7
pulmonary artery endothelial cell
7
skin fibroblast
6
T-cell
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of esophagus
6
erythroblast
6
foreskin melanocyte
6
gamma-delta T cell
6
myofibroblast cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
pericyte cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
skeletal muscle fiber
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
adipocyte
5
brain microvascular endothelial cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
inflammatory macrophage
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
mesangial cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
4
T follicular helper cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
glutamatergic neuron
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
nephron progenitor
4
neuronal stem cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
stromal cell of bone marrow
4
vascular associated smooth muscle cell
Disease term
1
Acute kidney failure, unspecified
1
Chronic kidney disease (CKD)
1
acute kidney failure
1
chronic kidney disease
Organ
1
epithelium
1
pancreas
Life stage
5
adult
Date released
5
September, 2023
1
May, 2021
Software used
3
r
2
deseq2
1
abc
Lab
5
KPMP
1
Jesse Engreitz, Stanford University
Project
5
KPMP
ENCODE
1
AMP
RFA
5
KPMP
1
AMP
award.project!
ENCODE
biosample_term_name!
Degenerative Connecting Tubule Cell
month_released!
January, 2022
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR989PUJ
released
Annotation file set
: Differential activity annotation of Connecting Tubule Intercalated Cell Type A between CKD and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR687OTH
released
Annotation file set
: Differential activity annotation of Connecting Tubule Intercalated Cell Type A between AKI and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR229SRB
released
Annotation file set
: Gene expression annotation of Connecting Tubule Intercalated Cell Type A of healthy individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR873QAP
released
Annotation file set
: Gene expression annotation of Connecting Tubule Intercalated Cell Type A of CKD individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR176YVS
released
Annotation file set
: Gene expression annotation of Connecting Tubule Intercalated Cell Type A of AKI individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR633DNL
released
Annotation file set
: enhancer-gene predicton of pancreatic-beta-cell-AMP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP