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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
56
large intestine
23
sigmoid colon
18
transverse colon
10
colonic mucosa
9
mucosa of rectum
8
HT-29
8
muscle layer of colon
7
SW480
6
HCT116
4
HCT-116 cell
4
RKO
4
rectum smooth muscle tissue
3
colon epithelial cell
1
Caco-2
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
rectal smooth muscle tissue
Organ
4
intestine
4
large intestine
Date released
1
February, 2021
1
June, 2020
1
May, 2021
1
October, 2022
Software used
2
macs
1
abc
1
chromhmm
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
award.project!
ENCODE
month_released!
January, 2022
Showing 4 of 4 results
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Download
FileSet
DSR003UZC
released
Annotation file set
: Binding sites annotation for HCT-116 cell (HCT-116) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR788ZGV
released
Annotation file set
: Binding sites annotation for Digestive tract HCT_116 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR355NCA
released
Annotation file set
: enhancer-gene predicton of HCT116-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR889UTS
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HCT 116 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP