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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
accessible chromatin
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
131
monocyte
55
HeLa-S3
51
H1-hESC
49
CD8-positive, alpha-beta T cell
43
islet of Langerhans
39
kidney
39
neural progenitor cell
33
heart
31
retina
29
hepatocyte
29
stomach
27
liver
25
brain
25
endothelial cell
23
EndoC_BH1
23
K562
22
macrophage
22
pancreatic ductal cell
21
subcutaneous adipose tissue
20
adrenal gland
20
breast cancer cell
20
epithelial cell of proximal tubule
20
lung
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
19
adipocyte
19
heart left ventricle
19
muscle of arm
19
muscle of leg
18
embryonic stem cell
18
glomerular endothelial cell
18
placenta
18
regulatory T cell
18
small intestine
17
B cell
17
large intestine
16
induced pluripotent stem cell
16
spleen
15
common myeloid progenitor, CD34-positive
15
muscle of back
15
pancreatic beta cell
15
tibial nerve
14
T-helper 1 cell
14
cardiac muscle cell
14
coronary artery
14
endothelial cell of hepatic sinusoid
14
pancreas
14
spinal cord
14
thymus
13
CD4-positive, alpha-beta T cell
13
GM12878
13
H9
13
caudate nucleus
13
endothelial cell of umbilical vein
13
hematopoietic multipotent progenitor cell
13
left lung
13
natural killer cell
13
osteoblast
13
pancreatic acinar cell
13
pancreatic alpha cell
13
renal cortex interstitium
13
renal pelvis
12
adipose tissue
12
fibroblast
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
retinal pigment epithelial cell
12
right atrium auricular region
12
right lung
12
substantia nigra
11
T-helper 17 cell
11
body of pancreas
11
mesenchymal stem cell
11
omental fat pad
11
putamen
11
tibial artery
10
MCF-7
10
Rhabdomyosarcoma
10
frontal cortex
10
gastric cancer cell
10
keratinocyte
10
neuronal stem cell
10
pancreatic delta cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right kidney
10
skeletal muscle myoblast
9
Ammon's horn
9
HepG2
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
heart right ventricle
9
liposarcoma
9
ovary
9
smooth muscle cell
9
testis
8
A549
8
B-lymphoblastoid cell line
8
ascending aorta
8
fibroblast cell line
8
glomerular visceral epithelial cell
8
left cardiac atrium
8
neutrophil
8
pituitary stalk
7
CD4-positive helper T cell
7
Jurkat
7
T cell
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
cerebellum
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
mature neutrophil
7
temporal lobe
6
Chondroid Chordoma
6
HEK293
6
HUES8
6
IMR-90
6
LNCAP
6
anterior cingulate cortex
6
aorta
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
fibroblast of lung
6
hESC cell
6
hepatic stellate cell
6
hypothalamus
6
iPSC derived cell line
6
left kidney
6
lymphocyte
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
sigmoid colon
6
skeletal muscle satellite cell
6
smooth muscle cell of the coronary artery
6
trophoblast cell
6
upper lobe of left lung
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM06990
5
GM12864
5
GM12865
5
GM19240
5
Glomerular Capillary Endothelial Cell
5
HAP-1
5
HCT-116 cell
5
KARPAS-422 cell
5
Lymphatic Endothelial Cell
5
Natural Killer T Cell
5
Non-Classical Monocyte
5
PC-9
5
SGBS preadipocytes
5
T-helper 2 cell
5
acute myeloid leukemia
5
choroid plexus epithelial cell
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
memory B cell
5
mesendoderm
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
right lobe of liver
Organ
4
intestine
4
large intestine
Date released
2
February, 2021
1
June, 2020
1
May, 2021
1
October, 2022
Software used
3
macs
1
abc
1
chromhmm
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
award.project!
ENCODE
month_released!
September, 2022
organ_slims!
penis
Showing 5 of 5 results
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Download
FileSet
DSR003UZC
released
Annotation file set
: Binding sites annotation for HCT-116 cell (HCT-116) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR635NLE
released
Annotation file set
: Histone modifications annotation for Digestive tract HCT_116 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR788ZGV
released
Annotation file set
: Binding sites annotation for Digestive tract HCT_116 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR355NCA
released
Annotation file set
: enhancer-gene predicton of HCT116-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR889UTS
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HCT 116 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP