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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
131
monocyte
90
heart
86
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
H1-hESC
52
left lung
51
neural progenitor cell
48
CD8-positive, alpha-beta T cell
48
thymus
47
liver
45
right lung
44
B cell
43
hematopoietic multipotent progenitor cell
42
islet of Langerhans
42
right kidney
40
K562
40
renal cortex interstitium
40
renal pelvis
40
retina
36
hepatocyte
36
left kidney
35
spinal cord
34
heart left ventricle
34
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
28
endothelial cell
28
regulatory T cell
26
MCF-7
26
natural killer cell
25
macrophage
25
tibial nerve
24
adipocyte
24
body of pancreas
23
EndoC_BH1
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
foreskin keratinocyte
22
pancreatic ductal cell
21
T-helper 17 cell
21
caudate nucleus
21
glomerular endothelial cell
21
pancreas
20
breast cancer cell
20
coronary artery
20
mononuclear cell
20
ovary
20
pigmented layer of retina
20
psoas muscle
20
subcutaneous adipose tissue
19
foreskin fibroblast
19
heart right ventricle
19
mesenchymal stem cell
19
right atrium auricular region
18
HFFc6
18
T cell
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
thyroid gland
18
tibial artery
18
transverse colon
17
T-helper 2 cell
17
cardiac muscle cell
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
substantia nigra
17
testis
16
HepG2
16
chorionic villus
16
induced pluripotent stem cell
16
pancreatic beta cell
16
skeletal muscle tissue
16
upper lobe of left lung
15
GM12878
15
ascending aorta
15
cerebellum
15
fibroblast
15
fibroblast of lung
15
frontal cortex
15
keratinocyte
15
layer of hippocampus
15
neutrophil
15
pancreatic alpha cell
15
retinal pigment epithelial cell
15
skeletal muscle myoblast
15
smooth muscle cell
14
H9
14
endocrine pancreas
14
endothelial cell of hepatic sinusoid
14
mammary gland epithelial cell
14
prostate gland
14
putamen
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
fibroblast of cardiac tissue
13
neurosphere
13
pancreatic acinar cell
13
pancreatic delta cell
12
Ammon's horn
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
neuronal stem cell
12
temporal lobe
11
breast epithelium
11
epithelial cell of prostate
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal pelvis
11
mammary epithelial cell
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
hepatic stellate cell
10
kidney tubule cell
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
CD4-positive, alpha-beta T cell
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
skeletal muscle satellite cell
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
dermis blood vessel endothelial cell
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
cingulate gyrus
7
colonic mucosa
7
dermis lymphatic vessel endothelial cell
7
duodenal mucosa
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
7
mast cell
7
renal cortical epithelial cell
7
right lobe of liver
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
award.project!
ENCODE
files.file_type!
bed bed9+
month_released!
August, 2017
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP