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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
131
monocyte
90
heart
86
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
neural progenitor cell
49
liver
48
CD8-positive, alpha-beta T cell
48
thymus
45
right lung
44
islet of Langerhans
43
hematopoietic multipotent progenitor cell
42
right kidney
41
B cell
41
K562
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
35
spinal cord
34
heart left ventricle
34
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
28
regulatory T cell
26
MCF-7
25
adipocyte
25
tibial nerve
24
body of pancreas
23
T-helper 1 cell
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
natural killer cell
22
pancreas
21
subcutaneous adipose tissue
20
T-helper 17 cell
20
breast cancer cell
20
coronary artery
20
macrophage
20
mononuclear cell
20
ovary
20
psoas muscle
19
foreskin fibroblast
19
heart right ventricle
19
mesenchymal stem cell
19
right atrium auricular region
18
HFFc6
18
T cell
18
embryonic stem cell
18
gastrocnemius medialis
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
cardiac muscle cell
17
muscle of trunk
17
omental fat pad
17
testis
16
GM12878
16
chorionic villus
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
skeletal muscle myoblast
16
skeletal muscle tissue
16
upper lobe of left lung
15
ascending aorta
15
cerebellum
15
frontal cortex
15
neutrophil
14
H9
14
endocrine pancreas
14
osteoblast
14
prostate gland
14
putamen
13
CD4-positive, alpha-beta T cell
13
Peyer's patch
13
aorta
13
fibroblast of cardiac tissue
13
neurosphere
13
smooth muscle cell
13
temporal lobe
12
Ammon's horn
12
fibroblast
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
gastric cancer cell
10
lymphocyte
10
neuronal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
HEK293
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
hepatic stellate cell
9
liposarcoma
9
parathyroid adenoma
9
skeletal muscle satellite cell
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM06990
8
GM12865
8
HT-29
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
naive T cell
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CMK
7
Caco-2 cell
7
GM12864
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mature neutrophil
7
right lobe of liver
7
skin fibroblast
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM23248
6
HAP-1
6
HUES8
6
Jurkat
6
KARPAS-422 cell
6
LNCAP
6
LoVo cell
6
MM.1S
6
OCI-LY7
6
PC-9
6
SJSA1
6
SW480
6
WI38
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
award.project!
ENCODE
files.file_type!
txt
month_released!
November, 2020
organ_slims!
epithelium
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP