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Embeddings type
3
Accessible chromatin
3
Gene expression
Embeddings Category
6
umap
Underlying Assay
2
10X scRNA-seq
2
10X snATAC-seq
1
sciATAC-seq
Available data
3
h5ad
3
mtx
1
rds
1
tsv
File set status
6
released
Organism
2
Homo sapiens
Biosample type
5
tissue
2
primary cell
Biosample term
4
islet of Langerhans
2
pancreas
2
peripheral blood mononuclear cell
1
heart
1
tissues
Tissue term
4
pancreas
2
blood
1
heart
1
tissues
Organ
4
pancreas
2
blood
2
bodily fluid
1
heart
Date released
2
August, 2021
2
October, 2024
1
June, 2025
1
November, 2021
Lab
3
Kyle Gaulton, UCSD
2
Franck Mauvais-Jarvis Lab
1
Bing Ren, UCSD
Project
LungMap
2
T1D
2
community
1
AMP
1
ENCODE
RFA
AMP
2
T1D
2
community
1
AMP2
1
ENCODE3
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Showing 6 of 6 results
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FileSet
DSR445357
released
Embeddings file set
: Integrate object with UMAP and RNA counts for FNIH multiome, CAREHF multiome, DPT and HiC.
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR662TAR
released
Embeddings file set
: Single nucleus ATAC-seq data in human pancreatic islets for 15 donor
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR867WVO
released
Embeddings file set
: Single cell RNA-seq data in human pancreatic islets for 52 donors
Lab:
Franck Mauvais-Jarvis Lab
Project:
community
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D