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Embeddings type
2
Gene expression
1
Accessible chromatin
Embeddings Category
3
umap
Available data
2
h5ad
1
rds
File set status
3
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
skeletal muscle
1
heart
Tissue term
2
skeletal muscle tissue
1
heart
Organ
2
musculature of body
1
heart
Life stage
2
adult
Date released
2
July, 2025
1
June, 2025
Encyclopedia version
1
fusion_consented.snatac.h5ad
1
fusion_consented.snrna_post_decontx.h5ad
Lab
2
Stephen Parker, UMich
1
Kyle Gaulton, UCSD
Project
3
AMP
RFA
58
AMP
3
AMP2
2
T1D
2
community
1
ENCODE3
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LungMap
Showing 3 of 3 results
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FileSet
DSR291812
released
Embeddings file set
: Single-nucleus chromatin accessibility profiles quantified at consensus peak summits, with UMAP embeddings generated using Scanpy. (150bp +/- of the consensus peak summit).
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR144369
released
Embeddings file set
: Single-nucleus RNA-seq gene expression profiles after ambient RNA correction, with UMAP embeddings generated using Scanpy.
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR445357
released
Embeddings file set
: Integrate object with UMAP and RNA counts for FNIH multiome, CAREHF multiome, DPT and HiC.
Lab:
Kyle Gaulton, UCSD
Project:
AMP