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Schema
Citing CMDGA
Clear Filters
Annotation type
2
variant allelic effects
Annotation Category
2
Genetic variant effects
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
27
endothelial cell
26
fibroblast
19
pericyte cell
19
smooth muscle cell
16
endothelial cell of hepatic sinusoid
16
macrophage
15
CD14-positive monocyte
14
hepatocyte
12
excitatory neuron
11
pancreatic acinar cell
10
astrocyte
10
pancreatic ductal cell
9
pancreatic alpha cell
9
pancreatic beta cell
9
pancreatic delta cell
9
skeletal muscle fiber
8
T cell
7
type II pneumocyte
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
erythroblast
6
keratinocyte
6
skeletal muscle satellite cell
6
type I muscle cell
6
type II muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
B cell
5
CD8-positive, alpha-beta T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
inhibitory neuron
5
pancreatic endothelial cell
5
pancreatic stellate cell
4
adipocyte
4
blood vessel smooth muscle cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
luminal epithelial cell of mammary gland
4
mesenchymal stem cell
4
mesothelial cell
4
myofibroblast cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
fibroblast of cardiac tissue
3
glial cell
3
goblet cell
3
mammary gland epithelial cell
3
mast cell
3
natural killer cell
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic quiescent stellate cell
3
parietal cell
3
peptic cell
3
schwann cell
3
thyroid follicular cell
3
type B pancreatic cell
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
Muller cell
2
Schwann cell
2
T-cell
2
alveolar macrophage
2
articular chondrocyte
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle cell
2
colon goblet cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
granular cell of epidermis
2
intestinal tuft cell
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
luteal cell
2
mature NK T cell
2
melanocyte
2
memory B cell
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive t cell
2
neural cell
2
non keratinizing barrier epithelial cell
2
oligodendrocyte
2
pancreatic polypeptide-secreting cell
2
paneth cell
2
plasma cell
2
regular atrial cardiac myocyte
2
renal principal cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
stomach neuroendocrine cell
2
stromal cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
2
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-2 B cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Satellite Cells, Skeletal Muscle
1
T-helper 17 cell
1
alternatively activated macrophage
1
bronchial goblet cell
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
common myeloid progenitor, CD34-positive
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
endothelial cell of artery
1
endothelial cell of umbilical vein
1
enteroendocrine cell
1
epithelial cell of prostate
1
epithelial cell of proximal tubule
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of arm
Date released
2
February, 2024
Software used
2
deltasvm
Lab
2
Bing Ren, UCSD
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
award.project!
T1D
lab.title!
AMP-T2D consortium
month_released!
August, 2017
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR333IHE
released
Annotation file set
: Variant allelic effects annotation of schwann cells from snATAC (sub-type2) from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR043PQT
released
Annotation file set
: Variant allelic effects annotation of schwann cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP