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Schema
Clear Filters
Annotation type
2990
target gene predictions
2638
pQTL
1709
candidate regulatory elements
1219
accessible chromatin
977
histone modifications
944
chromatin state
817
binding sites
685
gene expression
484
differential activity
180
eQTL
140
variant allelic effects
74
Fine-mapped variants
23
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Annotation Category
5667
cis-regulatory elements
3075
Genetic variant effects
2990
Target gene links
1169
Gene expression levels
2
Others
Annotation type Category
5248
ChIP-seq
4522
DNase-seq
2638
quantitative proteomics
546
RNA-seq
512
ATAC-seq
404
snATAC-seq
305
single cell RNA-seq
189
HiC
147
scRNA-seq
139
H3K27ac ChIP-Seq
84
snDropSeq
47
pCHi-C
25
snRNA-seq
17
Expression arrays
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
Available data
8008
bed bed3+
3551
tsv
869
bed bed9
518
bigWig
112
txt
40
bigBed bed9
34
bed bed9+
26
csv
16
bigBed narrowPeak
12
bed bed3
12
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
File set status
12901
released
1
archived
1
revoked
Genome assembly (visualization)
6944
hg19
3902
GRCh38
4
hg18
Organism
12856
Homo sapiens
Biosample type
5951
tissue
3874
primary cell
2559
cell line
514
in vitro differentiated cells
4
stem cell
Biosample term
2636
whole blood
133
monocyte
110
heart
107
stomach
95
kidney
93
fibroblast
89
brain
89
endothelial cell
86
head of caudate nucleus
84
muscle of arm
82
lung
82
placenta
77
adrenal gland
76
A549
76
small intestine
72
macrophage
71
CD8-positive, alpha-beta T cell
71
muscle of leg
70
large intestine
70
smooth muscle cell
69
muscle of back
68
HeLa-S3
68
T-cell
67
left lung
66
B cell
66
common myeloid progenitor, CD34-positive
64
CD4-positive, alpha-beta T cell
59
dorsolateral prefrontal cortex
57
thymus
56
right lung
55
hematopoietic multipotent progenitor cell
55
stimulated activated CD4-positive, alpha-beta T cell
54
H1-hESC
52
hepatocyte
52
neural progenitor cell
52
right kidney
51
renal cortex interstitium
50
liver
50
renal pelvis
49
natural killer cell
48
K562
48
posterior cingulate gyrus
46
adipocyte
45
T cell
45
islet of Langerhans
45
left kidney
44
heart left ventricle
43
retina
41
spinal cord
39
CD14-positive monocyte
39
spleen
38
cardiac muscle cell
37
CD4-positive, alpha-beta memory T cell
33
MCF-7
32
T-helper 1 cell
32
glutamatergic neuron
32
pericyte
31
activated CD4-positive, alpha-beta T cell
31
adipose tissue
31
astrocyte
31
keratinocyte
29
heart right ventricle
29
ovary
29
pancreatic ductal cell
28
T-helper 17 cell
28
body of pancreas
28
pancreas
28
tibial nerve
28
trophoblast cell
26
CD8-positive, alpha-beta memory T cell
26
T-helper 2 cell
26
epithelial cell of proximal tubule
26
regulatory T cell
25
naive thymus-derived CD4-positive, alpha-beta T cell
25
psoas muscle
25
stimulated activated CD8-positive, alpha-beta memory T cell
24
dendritic cell
24
endothelial cell of lymphatic vessel
24
foreskin keratinocyte
24
gastrocnemius medialis
24
neuron
24
pericyte cell
24
sigmoid colon
23
EndoC_BH1
23
H9
23
caudate nucleus
23
foreskin fibroblast
23
upper lobe of left lung
22
GABAergic neuron
22
HCT116
22
endothelial cell of umbilical vein
22
glomerular endothelial cell
22
thyroid gland
21
coronary artery
21
right atrium auricular region
21
testis
21
tibial artery
20
breast cancer cell
20
mesenchymal stem cell
20
mononuclear cell
20
subcutaneous adipose tissue
20
transverse colon
19
HFFc6
19
HepG2
19
endocardial cell
19
hepatic stellate cell
19
omental fat pad
18
ascending aorta
18
embryonic stem cell
18
muscle of trunk
18
naive thymus-derived CD8-positive, alpha-beta T cell
17
Peyer's patch
17
erythroblast
17
fibroblast of lung
17
frontal cortex
16
GM12878
16
cerebellum
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
induced pluripotent stem cell
16
mast cell
16
pigmented layer of retina
16
skeletal muscle satellite cell
16
substantia nigra
15
activated T-cell
15
bronchial epithelial cell
15
mammary epithelial cell
15
retinal pigment epithelial cell
15
skeletal muscle myoblast
14
activated CD8-positive, alpha-beta memory T cell
14
aorta
14
endocrine pancreas
14
layer of hippocampus
14
left renal cortex interstitium
14
osteoblast
14
pancreatic acinar cell
14
right renal pelvis
14
skeletal muscle tissue
13
breast epithelium
13
dermis blood vessel endothelial cell
13
excitatory neuron
13
fibroblast of dermis
13
glomerular visceral epithelial cell
13
left cardiac atrium
13
mammary gland epithelial cell
13
prostate gland
12
Ammon's horn
12
SK-N-DZ
12
colonic mucosa
12
epithelial cell of prostate
12
left renal pelvis
12
naive B cell
12
pancreatic beta cell
11
IMR-90
11
SK-N-SH
11
choroid plexus epithelial cell
11
esophagus muscularis mucosa
11
neuronal stem cell
11
neurosphere
11
neutrophil
11
progenitor cell of endocrine pancreas
11
putamen
11
thoracic aorta
10
Rhabdomyosarcoma
10
endodermal cell
10
esophagus squamous epithelium
10
foreskin melanocyte
10
gastric cancer cell
10
limb
10
lymphoblastoid cell line
10
neuroblastoma cell
10
pancreatic alpha cell
10
thyroid follicular cell
9
22Rv1
9
GM06990
9
HAP-1
9
HT-29
9
PC-9
9
SK-N-MC
9
WERI-Rb-1
9
WI38
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
esophagus
9
eye
9
globus pallidus
9
kidney tubule cell
9
lower leg skin
9
progenitor cell
9
temporal lobe
9
tongue
8
B Cell
8
GM12864
8
GM12865
8
HEK293
8
LNCaP clone FGC
8
MM.1S
8
NAMALWA cell
8
OCI-LY7
Organ
3365
blood
2902
vasculature
2861
blood vessel
2853
bodily fluid
2659
vein
932
epithelium
903
brain
756
kidney
516
connective tissue
488
heart
440
lung
386
musculature of body
358
intestine
299
pancreas
296
skin of body
244
limb
240
liver
226
large intestine
215
embryo
174
extraembryonic component
161
eye
142
adipose tissue
140
stomach
111
muscle organ
104
bone element
104
mammary gland
102
adrenal gland
97
placenta
97
small intestine
93
thymus
93
uterus
88
artery
87
prostate gland
73
ureter
64
gonad
64
penis
63
spleen
62
lymph node
60
__MARKER__
49
spinal cord
48
esophagus
47
thyroid gland
32
ovary
31
testis
25
nerve
24
lymphoid tissue
24
skeleton
21
lymphatic vessel
21
mouth
16
bronchus
15
breast
13
pituitary gland
13
urinary bladder
12
tongue
12
vagina
11
bone marrow
5
trachea
4
nose
1
embryonic structure
1
gallbladder
1
pericardium
Life stage
5070
adult
1386
embryonic
468
unknown
458
fetal
115
child
75
newborn
32
young adult
30
postnatal
Date released
2636
February, 2025
2590
February, 2021
2511
September, 2022
1984
July, 2026
389
May, 2021
372
February, 2024
333
November, 2021
320
May, 2026
289
June, 2020
286
September, 2023
155
May, 2020
128
August, 2021
128
March, 2020
106
January, 2022
99
October, 2022
89
January, 2020
70
March, 2023
64
February, 2020
49
May, 2022
44
November, 2022
40
May, 2024
35
August, 2017
33
July, 2025
31
February, 2023
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
2
January, 2025
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Software used
2530
macs
2386
r
1035
chromhmm
838
encode-ccres
250
abc
139
qTLtools
136
deltasvm
117
deseq2
27
chicago
27
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
hiccups
12
deeptools
12
matrix-eQTL
12
umitools
11
rasqual
9
salmon
8
cicero
8
fastqtl
6
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
probabel
1
snap
1
spp
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
11412
AMP-T2D consortium
445
Kyle Gaulton, UCSD
393
Bing Ren, UCSD
281
KPMP
139
Jesse Engreitz, Stanford University
98
Stephen Parker, UMich
53
Katalin Susztak, Upenn
24
Ines Cebola, Imperial College London
19
Xin Sun, UCSD
9
Anna Gloyn, Oxford
8
Struan F.A. Grant, CHOP
5
ITG
5
Patrick T. Ellinor, Broad
4
Doug Phanstiel, UNC
4
Joseph Wu, Stanford
4
Karen Mohlke, UNC
Project
12248
AMP
333
ENCODE
281
KPMP
T1D
19
LungMap
17
community
5
ITG
Collection Tags
2635
UK_Biobank
2499
EpiMap
1848
ChIP-Atlas
1458
ENCODE-rE2G
966
ENCODE
645
DGA
533
AMP
406
T2DKP
393
HDMA
362
T1D
320
pyxis
281
KPMP
219
BLUEPRINT
174
4DN
151
GTEx
146
T2DKP
133
CATlas
111
T2D
101
eQTLCatalogue
100
CMDGA
67
HPAP
26
FNIH_projects-heart
12
FNIH_projects-liver
12
ROADMAP
RFA
12052
AMP
333
ENCODE3
281
KPMP
196
AMP2
19
LungMap2
17
community
5
ITG
award.project!
T1D
type!!!
Pipeline
Showing 4 of 12903 results
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Download
FileSet
DSR629511
released
Annotation file set
: Accessible chromatin sites for Thyroid thyroid follicular (TPO, TG, TSHR+)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR353309
released
Annotation file set
: Accessible chromatin sites for Thyroid thyroid follicular (TPO, TG, TSHR+)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR014629
released
Annotation file set
: Accessible chromatin sites for Thymus cortical TEC (CDH1+; ADARB2+; SLIT-ROBO signaling; very minor AIRE+ pre-decontX; high expression of Park et al cTEC/mcTEC genes)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR868429
released
Annotation file set
: Accessible chromatin sites for Thymus medullary TEC (myoid Type I) (MYH7+; clusters with 2)
Lab:
AMP-T2D consortium
Project:
AMP